Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00558 ATGGAGAATCAATTCCAATTCATTGAACAACAGAAACCCATCATTCAAAAGGATTTTTCGTCTTCTTCTTTTCAACAATTCGTCTCTGGATCTTACTTTTATGGCGATCCAACTCTATGGGGTTCTATACTTCGACCTCCAAGGTCTCAAAACGGTGGTTTTAATGGAAACATTGATCAATCAAAATCCCCATCTTCTTCTTCCTCTTCTTCTTCTCCTAATTCTCCTTCTTCTACTTCTTCGTCTTTGTTTTCGACGGAAAAATCTGAGATTTCTAGTGGGAATTTGATCGATGGCATTCATGGAATTGAAAGTAATCTTCACCCAAATGGAGAAAGTTTTGTTCCTTTGAATTTCTTGGAAACGTTTCCCAAACAAGAATCTGAGTCCCTTTCTCCTTCCCCTCCTCTGTTTCAATCTCGAATTGATTCAACGAATCTTACTCTGTTTCTTCAAGAACCCACCATTGTTGATCCATCCCCACAAAACCCATTTCAAATTCATGCTCAAACAGGACTCCAATGGCTGAAAAACAACCAAAATCAGAACCGAAGCGAGGCCATTGTTGCGGGTGCAGCGAGTAATTATAGCGATTTCTGGCTGGGGGCAACGAAGACGCAACCAATGAAACAGATTGGAAGAAAACAGGGGAATCAGAAAACAGAGTCGTCGGCAGTCGGAAAGTTGTATAGAGGTGTCCGGCAACGGCACTGGGGGAAATGGGTAGCGGAGATTAGGCTGCCGAGGAATCGAACGAGGGTGTGGCTTGGGACATTCGACACAGCAGTCGAAGCCGCCGTCGCGTACGACACCGCCGCCTACATGCTAAGGGGGGAATTTGCACATTTGAATTTTCCGGATCAGAAACACCGCCTGAAATCAAACTCTCTGAACAGGACGACGGCGGCGCTGCTGGAAGCCAAGTTGCAAGCGATCAAACAGGGGAATTCGGGTAGGAAAAAAAGCGTTGCGGGGACCGTATCCACCATTGATTGTTCTGAGAAGGAATTGTTGGAGGGAGATTCAAAAGGGTTGGATATGAGGAAGAAGGCGTCGGAAAACGTGGGTGGGGGATCGGAAACAGGGGAAATGAAGAGAAATGAAGATGGAAATTTGGAAATTGAACAACACGTTCAACTCAGCAGAATGCCATCTTTGGATATGGATATGATTTGGGATGCTTTGTTAGTTTCTGATTCATAA 1203 44.64 MENQFQFIEQQKPIIQKDFSSSSFQQFVSGSYFYGDPTLWGSILRPPRSQNGGFNGNIDQSKSPSSSSSSSSPNSPSSTSSSLFSTEKSEISSGNLIDGIHGIESNLHPNGESFVPLNFLETFPKQESESLSPSPPLFQSRIDSTNLTLFLQEPTIVDPSPQNPFQIHAQTGLQWLKNNQNQNRSEAIVAGAASNYSDFWLGATKTQPMKQIGRKQGNQKTESSAVGKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAVEAAVAYDTAAYMLRGEFAHLNFPDQKHRLKSNSLNRTTAALLEAKLQAIKQGNSGRKKSVAGTVSTIDCSEKELLEGDSKGLDMRKKASENVGGGSETGEMKRNEDGNLEIEQHVQLSRMPSLDMDMIWDALLVSDS* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6109318 6110520 - Chy5G096040.1 Chy05g00558 226785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00558 400 MobiDBLite consensus disorder prediction 341 369 - -
Chy05g00558 400 SUPERFAMILY DNA-binding domain 229 287 IPR016177 GO:0003677
Chy05g00558 400 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Chy05g00558 400 Pfam AP2 domain 230 278 IPR001471 GO:0003700|GO:0006355
Chy05g00558 400 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Chy05g00558 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 13 399 - -
Chy05g00558 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 399 - -
Chy05g00558 400 Gene3D AP2/ERF domain 229 287 IPR036955 GO:0003700|GO:0006355
Chy05g00558 400 MobiDBLite consensus disorder prediction 44 85 - -
Chy05g00558 400 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Chy05g00558 400 PRINTS Ethylene responsive element binding protein signature 252 268 IPR001471 GO:0003700|GO:0006355
Chy05g00558 400 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00558 - - - csv:101206365 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00558 Chy-Chr5:6109318 Chy07g00697 Chy-Chr7:6747463 8.57E-36 dispersed
Chy07g01159 Chy-Chr7:16502949 Chy05g00558 Chy-Chr5:6109318 8.91E-33 dispersed
Chy05g00558 Chy-Chr5:6109318 Chy01g00354 Chy-Chr1:2568075 1.34E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18000 PF00847 AP2 7.10E-13 CL0081 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00558 Chy_Chr05 FPKM 8.187103 9.731336 12.134914 13.338675 15.248867 14.277127 15.20276 9.91303 8.993862 12.160723