Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy05g00567 | ATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCTGTGCACTCTTTTATTCTGGTAATGCTAGTCTTGAGGCAGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGACCAGATGCCTTTGGTTCCCAAGGACACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTAGGAAGAAAAAGGAGGAGGAAGAGAAGATAGCTGAAAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCGAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGGGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTACCACCAGAAGATCCTTCAACTGCAAAACCTCCGGCACCTGTTGTTGAAGAGAAAAAGTTGTCTTTACCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGTGAAAAGTCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATCGAAGGTGGTGAGTTCTTGTTTCTGCCCAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTTGACTCTGCTATTAAAAATCCTTTCTTTGGCATCCTCTAA | 921 | 43.54 | MVVPEVNKNILEELEAMGFPTARATCALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKSPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGIL* | 307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6192109 | 6204962 | + | Chy5G096130.1 | Chy05g00567 | 226794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy05g00567 | 306 | SUPERFAMILY | UBA-like | 4 | 59 | IPR009060 | GO:0005515 | |
| Chy05g00567 | 306 | MobiDBLite | consensus disorder prediction | 147 | 165 | - | - | |
| Chy05g00567 | 306 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Chy05g00567 | 306 | SUPERFAMILY | PUG domain-like | 192 | 302 | IPR036339 | - | |
| Chy05g00567 | 306 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
| Chy05g00567 | 306 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Chy05g00567 | 306 | Pfam | PUB domain | 213 | 284 | IPR018997 | - | |
| Chy05g00567 | 306 | SMART | PGNneu | 216 | 279 | - | - | |
| Chy05g00567 | 306 | MobiDBLite | consensus disorder prediction | 53 | 102 | - | - | |
| Chy05g00567 | 306 | MobiDBLite | consensus disorder prediction | 147 | 178 | - | - | |
| Chy05g00567 | 306 | Gene3D | - | 197 | 296 | - | - | |
| Chy05g00567 | 306 | Coils | Coil | 119 | 156 | - | - | |
| Chy05g00567 | 306 | Pfam | UBA/TS-N domain | 11 | 42 | IPR015940 | - | |
| Chy05g00567 | 306 | Gene3D | - | 8 | 52 | - | - | |
| Chy05g00567 | 306 | MobiDBLite | consensus disorder prediction | 78 | 102 | - | - | |
| Chy05g00567 | 306 | CDD | PUB_UBA_plant | 200 | 306 | - | - | |
| Chy05g00567 | 306 | Coils | Coil | 76 | 110 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy05g00567 | Chy-Chr5:6192109 | Chy05g00938 | Chy-Chr5:14037650 | 1.78E-98 | dispersed | |
| Chy05g00566 | Chy-Chr5:6188828 | Chy05g00567 | Chy-Chr5:6192109 | 3.35E-15 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy05g00567 | K24348 | - | csv:101215434 | 502.671 |