Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00620 ATGGTGGTTTTCTGTGGGCGTTTGGTTTCGGAATGGCTTGTTGGAGTCCTCGTCTTCGTAATAGAACGAAACTTCATGCTCCGTGAACGAGTCTTGTATTTCGTATACGGTCTCCGCAAGAGCTTCCAGAACTGCGCTTGGTTAGGGCTAGTTCTAATCGCTTGGATGATAATGTTCCCGGACGTTCACCACAACAATAAAGTCCTCCTAAAGGTTTTCCGATTCTTAATCGCCGTCCTAATCGGCGCCACCATCTGGCTTCTCAAGATCCTTCTCGTAAAAGTTCTTGCATCCTCGTTCCACGTCGCGACGTTCTTCGATCGAATGAAGGAGAGCGTGTTCAACCACTATATCCTCGAGACACTATCCGGACCGCCACTGGACGAGGAGGAGAGGGATAAGGAAGTAAATCGTCGGCGGCGGTTGGTACATATGTCGAAATCACTGCCAGCGCGGTGGCGGGAGGGCGGAGGAGGACAGACTTTGTCGAGATCGAAACGGCAGGATTCTTGTCAGAAGATCGATATGGAGAGATTGAGGAAGCTGAGCTTGGAGAGGAGACCGTCGGCTTGGAGTGTGAAAAGATTGGTGAGCTATGTGAGATCGTCGGGACTGTCGACGATATCGAGGACGGTGGATGATTTTGCCAACGCCGAATCGGAGATTACCAGTGAATCGGAGGCGAGAAACTGCGCTCAGAGAGTGTTCAAGAATGTCGCTAAGCCGGGTGCCAGATACATTGAAGAGGAAGATCTACTGAGATTCCTGAAGGATGAAGAAGTGAACACCATTTTCCCTCTCTTTGAAGGCGCCATTGAAACAGGAAAAATCTCCAAATCCGCTTTCAGAAACTGGGTGGTTCATGCCTACATTGAGCGGAAGGCGTTGGCACATTCTTTAAACGACACCAAAACCGCAGTCCAGCAGCTCCACAAGCTGGCCAGCGCAGTTGTCATTGTGATCATCATTGTCATTTCTCTTCTCGTCCTTGGCGTCGCCACAACTAAGGTCCTCTTCGTCATCACCTCTCAGCTTCTCCTTGTTGGATTCATGTTCCAAAACACCTGCAAAACCATCTTTGAATCAATCATCTTCGTCTTTGTCATGCATCCTTTTGATGTTGGCGATCGCTGCGTCATCGATGGCGTCCATATGTTTGTAGAAGAGATGAACATTTTGTCGACGGTGTTCTTGAGATTCGACAATGAGAAGATTTACTATCCCAACTCGGTTCTGCTGACGAAGCCGATCAGCAATTTCAGAAGAAGTCCCGACATGTCGGATACAGTCGATTTCACAATTGACGTCTCCACTTCTTTTGACAACATCACAGCCCTCAGGAAGGCAATGCAAATATACATTGAGAGCAAACCAAAGCATTGGAGCCCAAAACACTCATTGGTAGTGAAAGAGATTGAAAATGTGGACAAGATGAAGATGAGCTTGTGTGTGCAGCACACCATGAACCTTCAAAACTTCCCTGAAAGAAACAGCAGAAGATCAGACCTCATTTTGGAACTGAAAAGGGTTTTTGAGAATCTGGGCATAAAATACCATCTCCTTCCCCAAGAAGTTCTTGTCACTCAGTTCAACTTGACTAATGGCAGAATGGCTATCCCGTCTTCGTGA 1629 47.51 MVVFCGRLVSEWLVGVLVFVIERNFMLRERVLYFVYGLRKSFQNCAWLGLVLIAWMIMFPDVHHNNKVLLKVFRFLIAVLIGATIWLLKILLVKVLASSFHVATFFDRMKESVFNHYILETLSGPPLDEEERDKEVNRRRRLVHMSKSLPARWREGGGGQTLSRSKRQDSCQKIDMERLRKLSLERRPSAWSVKRLVSYVRSSGLSTISRTVDDFANAESEITSESEARNCAQRVFKNVAKPGARYIEEEDLLRFLKDEEVNTIFPLFEGAIETGKISKSAFRNWVVHAYIERKALAHSLNDTKTAVQQLHKLASAVVIVIIIVISLLVLGVATTKVLFVITSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDGVHMFVEEMNILSTVFLRFDNEKIYYPNSVLLTKPISNFRRSPDMSDTVDFTIDVSTSFDNITALRKAMQIYIESKPKHWSPKHSLVVKEIENVDKMKMSLCVQHTMNLQNFPERNSRRSDLILELKRVFENLGIKYHLLPQEVLVTQFNLTNGRMAIPSS* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7539200 7547686 - Chy5G096660.1 Chy05g00620 226847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00620 542 PIRSF Memb_At2g17000 1 540 IPR016688 -
Chy05g00620 542 SUPERFAMILY Sm-like ribonucleoproteins 361 420 IPR010920 -
Chy05g00620 542 Pfam Mechanosensitive ion channel 312 517 IPR006685 GO:0016020|GO:0055085
Chy05g00620 542 Gene3D - 276 368 - -
Chy05g00620 542 Gene3D - 371 420 IPR023408 -
Chy05g00620 542 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1 533 - -
Chy05g00620 542 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 533 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00620 Chy-Chr5:7539200 Chy11g01095 Chy-Chr11:15977556 1.53E-170 dispersed
Chy05g00620 Chy-Chr5:7539200 Chy02g01258 Chy-Chr2:9193429 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00620 K22048 - csv:101206752 1046.96