Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00623 ATGTCAGAAGGCCTTGGCCGCTTGCAGAATAGTGACCTTGAAGAATTAAGAGAATTGGGGTCTGGCACCTTTGGCACATTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATAAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTAAACAAGATCGCAAGGTTGTTCGTTTTAAGAGTCTTGAAAAGCGGAAGCGCCTCTTGATTGCTATGGATGCGGCTTTTGGAATGGAACACCTGCACAGAAAGAATATTGTGCACTTTGATTTGAAAAGCGATAATCTACTGGTCAATCTTCGAGATCCTCGTCACTCAATATGCAAGGTGTTGTTTATGGTTTCGACATTATGTTTGGCTTGGCGTGAACTAGAGGACGATGAGTATCGAGAATGGGCTTTTATGTTTAAGGAGACTAATAGCACACTGGTTGACAGGGAGATTATTGTTGGGAGGGATGGCAACAGATGGGTCATTGGAGATTTACCATCAATGAGATTGAAGCCACTGCTACTGAATAAGAGGCAAGGGCACCCAATAGACAATACCAACCAGCAGAGTTCATTGTAG 576 43.23 MSEGLGRLQNSDLEELRELGSGTFGTFYHGKWRGTDVAIKRVNDRCFAGKPSKQDRKVVRFKSLEKRKRLLIAMDAAFGMEHLHRKNIVHFDLKSDNLLVNLRDPRHSICKVLFMVSTLCLAWRELEDDEYREWAFMFKETNSTLVDREIIVGRDGNRWVIGDLPSMRLKPLLLNKRQGHPIDNTNQQSSL* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7603334 7613553 + Chy5G096690.1 Chy05g00623 226850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00623 191 PANTHER SERINE-THREONINE PROTEIN KINASE 6 56 - -
Chy05g00623 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00623 191 SMART tyrkin_6 13 178 IPR020635 GO:0004713|GO:0006468
Chy05g00623 191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Chy05g00623 191 PANTHER SERINE-THREONINE PROTEIN KINASE 60 112 - -
Chy05g00623 191 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 6 56 - -
Chy05g00623 191 Pfam Protein tyrosine and serine/threonine kinase 63 102 IPR001245 GO:0004672|GO:0006468
Chy05g00623 191 Gene3D Transferase(Phosphotransferase) domain 1 56 169 - -
Chy05g00623 191 Gene3D Transferase(Phosphotransferase) domain 1 6 55 - -
Chy05g00623 191 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 60 112 - -
Chy05g00623 191 SUPERFAMILY Protein kinase-like (PK-like) 8 101 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00623 Chy-Chr5:7603334 Chy05g00935 Chy-Chr5:14006667 1.32E-40 dispersed
Chy05g00623 Chy-Chr5:7603334 Chy08g00913 Chy-Chr8:16570660 8.42E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71271 PF07714 PK_Tyr_Ser-Thr 4.40E-06 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00623 - - csv:101203826 177.178