Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00670 ATGGAGCATGGAGGTGTTGTGTCGAAGGGGATGGTGTCAGACCCTTCAAGTTCGTACCAAAAAATAATAATAGTTGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTACAGCTTTCATTGCTAACACCTTACGTACAACAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGCGGACCATTATCAGGGCTTATTGTGCAACCCACAGTCGGGTACTACAGTGATCGCTGCACCTCTAGGTTTGGTCGTCGTCGGCCGTTCATTGTTGCTGGAGCTAGTTTTGTGGCAATTGCAGTTTTCCTCATTGGCTTTGCTGCAGACATTGGGCATGCAGTGGGTGATCCGCTTAACAAACCAACAAAACCAAGAGCTGTTGCCATCTTTGTGGTTGGATTTTGGGTTCTTGATGTTGCTAACAACATGCTTCAAGGCCCTTGTAGAGCTCTGTTGGCAGATATGTCATGTAACAACCACAAGAAGATGAGAATGGCGAATGGATTTTTCTCATTCTTCATGGGGGTAGGGAATGTTTTGGGGTACGCAGCTGGGTCCTATAACAAACTCTACAAATTCCTTCCCTTCACACTAACCGAAGCATGTGACAGTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTATTCCTTCTCCTCATTACCACGTTCGCTGTGTTGACGGTGAGCGAGAAACAATTTGACCCACTGGAGATTGACGAAGAAGCAACACCCTTTTTTGGGAAATTGTTTGGAGCACTCAAGAAGTTGGAGAGGCCCATGTGGCTTTTGTTGCTGGTAACAGCATTGAACTGGATCGGTTGGTTCCCATTTATCATGTACGATACTGACTGGATGGGTTTGGAAGTGTACGGAGGAAAGCCAAAGGGGAGTCCTCAAGAAGTCAAGTTCTATGACCTTGGTGTTCGTGCTGGGGCCCTTGGGTTGATGATAAACTCATTTGTTTTGGGATTTTCAGCTTTGGGAATTGAGCCAATAAGCCGTATTTTAGGAGGCCTCAGATGGTGGTGGGGAATTGTTAACATTATATTTACAGTTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGTTGGAGGTCCATCAATGGTTTGAATCCTCCTCCACTAAACGTCAGGGCAGGAGCATTTTCGATCTTTGCGGTATTGGGTATTCCATTGTCAGTCACTTTTAGTGTTCCATTTGCCCTTGCGTCCATCTTTTCTTCAGAATCGGATGCGGGTCAAGGCCTCTCCTTGGGAATTCTCAACCTCTTCATTGTCATTCCACAATTTATCGTATCCTCAGTTAGTGGGCCATTAGATGCTGCTTTCGGAGGAGGAAACTTACCCGCATTCGTAATGGGTGGAATTGCTTCTTTTGCAAGTGCAATGTGTGCAATGTTTGTTCTCCCCGATCCACCACCTCAATCCGAAGCCTCCTTAACAATGGCCGGTGGTCATTGA 1488 46.1 MEHGGVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGASFVAIAVFLIGFAADIGHAVGDPLNKPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRMANGFFSFFMGVGNVLGYAAGSYNKLYKFLPFTLTEACDSYCANLKTCFLIDIVFLLLITTFAVLTVSEKQFDPLEIDEEATPFFGKLFGALKKLERPMWLLLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGSPQEVKFYDLGVRAGALGLMINSFVLGFSALGIEPISRILGGLRWWWGIVNIIFTVCMGSTVVVTKVAERWRSINGLNPPPLNVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSSVSGPLDAAFGGGNLPAFVMGGIASFASAMCAMFVLPDPPPQSEASLTMAGGH* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8534420 8536024 + Chy5G097160.1 Chy05g00670 226897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00670 495 Gene3D MFS general substrate transporter like domains 16 488 IPR036259 -
Chy05g00670 495 CDD MFS_SLC45_SUC 31 476 - -
Chy05g00670 495 PANTHER SUGAR TRANSPORTER 18 486 - -
Chy05g00670 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 486 - -
Chy05g00670 495 SUPERFAMILY MFS general substrate transporter 22 484 IPR036259 -
Chy05g00670 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 19 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
Chy05g00670 495 Pfam MFS/sugar transport protein 28 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00670 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 973.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01280 Chy-Chr3:15820581 Chy05g00670 Chy-Chr5:8534420 3.26E-154 dispersed
Chy05g00670 Chy-Chr5:8534420 Chy09g00637 Chy-Chr9:8149060 8.96E-138 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G22710 62.4 6.0e-180 627.5
Chy05g00670 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.3 2.9e-176 615.1
Chy05g00670 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.3 7.0e-148 520.8
Chy09g00637 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 3.5e-187 651.4
Chy05g00670 . 8 479 Sucrose Transporter Gene Family AT5G06170 61.2 3.4e-164 575.1
Chy05g00670 . 17 479 Sucrose Transporter Gene Family AT5G43610 64.1 6.1e-174 607.4
Chy03g01280 . 18 526 Sucrose Transporter Gene Family AT1G09960 66.8 3.7e-198 688.0
Chy05g00670 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.4 1.2e-132 470.3
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G71880 61.4 2.7e-172 602.1
Chy05g00670 . 17 496 Sucrose Transporter Gene Family AT1G71890 60.2 1.1e-168 590.1
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G71880 61.4 2.7e-172 602.1
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G22710 62.4 6.0e-180 627.5
Chy09g00637 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 3.5e-187 651.4
Chy03g01280 . 18 526 Sucrose Transporter Gene Family AT1G09960 66.8 3.7e-198 688.0
Chy05g00670 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.4 1.2e-132 470.3
Chy05g00670 . 17 496 Sucrose Transporter Gene Family AT1G71890 60.2 1.1e-168 590.1
Chy05g00670 . 17 479 Sucrose Transporter Gene Family AT5G43610 64.1 6.1e-174 607.4
Chy05g00670 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.3 7.0e-148 520.8
Chy05g00670 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.3 2.9e-176 615.1
Chy05g00670 . 8 479 Sucrose Transporter Gene Family AT5G06170 61.2 3.4e-164 575.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00670 Chy_Chr05 FPKM 1.242836 1.318633 1.186059 1.832997 1.835696 0.0 2.818914 1.232968 0.810347 0.469654