Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00682 ATGAAGCTTCATTTTCTATTTTTAGTTCCCTTTCTTTCACTCCTCTCCTCCGCCACCGCCTGGATAAACGCTCAAGCCACCTTCTACGGCGGCAGCGATGCTTCCGGCACAATGGGTGGAGCTTGTGGGTATGGAAATCTTTACAGTGAAGGATACGGGAGCAACACTGCGGCAATTAGCACTGCACTTTTCAACAATGGGTTGAGTTGTGGGAGTTGTTATGTGATTAAGTGCGTTAATGATCAGAAATGGTGCCTACCTGGCTCTGTTTTGGTTACTGCCACTAACTTCTGTCCCCCTAATAATGCTCTTCCTAATAACGCCGGTGGTTGGTGTAACCCTCCTCTCCATCACTTTGACCTCTCCCAGTCTGTTTTTCTCCGTATTGCTCAATACCACGCCGGTATCGTCCCCGTCCTCTATCGCAGGGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATAAAGGGCCATTCATACTTCAACTTAGTGTTAATAACCAACGTGGGAGGCGCTGGGGATGTTCATGCTGTGTCCGTAAAAGGCTCTAGAAGTGGGTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGTCATACCTATTTAGATGCCCAGCCCCTCTCTTTCAAGCTCACTACTAGCGACGGTCGTACTCTTATTTCCAACAATGTGGTTCCTGCTGGCTGGTCCTTTGGCCAGACCTTCACCGGCTCCCAATTTCGATGA 735 49.12 MKLHFLFLVPFLSLLSSATAWINAQATFYGGSDASGTMGGACGYGNLYSEGYGSNTAAISTALFNNGLSCGSCYVIKCVNDQKWCLPGSVLVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVLYRRAPCKRKGGVRFTIKGHSYFNLVLITNVGGAGDVHAVSVKGSRSGWQPMSRNWGQNWQSHTYLDAQPLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGSQFR* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8773611 8775648 + Chy5G097280.1 Chy05g00682 226909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00682 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Chy05g00682 244 Gene3D - 151 243 IPR036749 -
Chy05g00682 244 PANTHER EXPANSIN-A15 5 243 IPR002963 GO:0009664
Chy05g00682 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Chy05g00682 244 SUPERFAMILY Barwin-like endoglucanases 11 169 IPR036908 -
Chy05g00682 244 Gene3D - 13 147 IPR036908 -
Chy05g00682 244 PANTHER EXPANSIN 5 243 - -
Chy05g00682 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Chy05g00682 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Chy05g00682 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Chy05g00682 244 SMART dpbb_1 56 141 IPR007112 -
Chy05g00682 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Chy05g00682 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02491 Chy-Chr2:28417130 Chy05g00682 Chy-Chr5:8773611 1.91E-127 dispersed
Chy05g00682 Chy-Chr5:8773611 Chy10g00315 Chy-Chr10:7887475 1.00E-127 dispersed
Chy11g01152 Chy-Chr11:17431592 Chy05g00682 Chy-Chr5:8773611 1.50E-37 dispersed
Chy12g01532 Chy-Chr12:19055053 Chy05g00682 Chy-Chr5:8773611 6.17E-97 dispersed
Chy05g00682 Chy-Chr5:8773611 Chy10g01014 Chy-Chr10:15516342 5.02E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00682 - - csv:101202833 480.33