Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00688 ATGGGGTCCTGCTTATCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGTAAGAACAGTTCCAAGAGGCGAAATTGTTCGAGAAATTCCTCATTTGGGGATCTCCCACTTCATCGGATCCCTGGTAGGCTCTTCGCTAATGGCTTCACTGATACGGCGTCTCTGTTCACGCAGCAGGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGGATTTGAATCAGGGATCTTGGTGGGTATCTTTGTTACCACCTGGGAAGTGGGCACCCTCTGGGAATTTTGGCTCTAGGACGGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACTGATGATGTTCATAGAGAGATCAGTCTTAATAATACAGGAAGTATGAACTCGGATGAAGCTACCTCGTTTTTATCTGCTAACGAAGAGTTTAGGGCATCCATTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAAGAGTCTTTTCTTAAGGCTTTTAGAGTTATGGATTGGGAACTCAGAATGCATCAAACTATAGACAGCTTCTGTAGTGGTACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCTCTTGTTCCCATTCAATTGACTGTGGATCTGAAGCCAAATCTTCCAGTGAGCCATCTCAGCTGGAATTGTTTAAGGCCAGTAGCTCGGACTGTTTTCTTATTATCTTATCAGCCAAAATGTCAATCAACTCCTTTCCCCTCATCTGTCATTTTGCTGACCGATTTCTATGCATTCTTTTCCCCAACAGCTGAAGCAGAGAGAATCCGCAATTGTAGAGGTCGTGTCTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCAGTACCTGAAATATCATATAGACGGCTCACTGAAAAAGACGAATTCATTATTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGCGCTTCCGCAGCTCGCATTCTGGTAGAAACTGCAGTTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCTGTTGTTTGCCTCTTCCTTGACTCAAACTCTGGCAACCTATCATCTGCTTCCAATACCAAACCAGAAGAGCAACAAAGTTCAGCAGATCATTTCAGCACTCCAGTCGAGAATGAAGATTTCTCTGGCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACAAGCAAGGAAATTTTGCAGGATGGAAGCGAAGAAGATGAAATGAAGGAGGAAGAACATTCAGAAACAGAAACGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCGAGATTCAATCCTGGAAAAGAAGATAAGAAAGGCCGGAAGTGA 1665 44.92 MGSCLSAESRSPIPGSPTSPAKHHRSKNSSKRRNCSRNSSFGDLPLHRIPGRLFANGFTDTASLFTQQGKKGTNQDAMIVWEDLNQGSWWVSLLPPGKWAPSGNFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNNTGSMNSDEATSFLSANEEFRASIDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVPIQLTVDLKPNLPVSHLSWNCLRPVARTVFLLSYQPKCQSTPFPSSVILLTDFYAFFSPTAEAERIRNCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIILATDGIWDVLSNKEVVDIVASAPKRASAARILVETAVKAWKHKYPTSKIDDCAVVCLFLDSNSGNLSSASNTKPEEQQSSADHFSTPVENEDFSGPNGLNRSGTVRTSKEILQDGSEEDEMKEEEHSETETGIEWSALEGVSRVNTLVTLPRFNPGKEDKKGRK* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8866348 8869206 - Chy5G097340.1 Chy05g00688 226915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00688 554 Gene3D - 59 451 IPR036457 -
Chy05g00688 554 MobiDBLite consensus disorder prediction 456 500 - -
Chy05g00688 554 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 104 275 - -
Chy05g00688 554 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 321 538 - -
Chy05g00688 554 MobiDBLite consensus disorder prediction 1 16 - -
Chy05g00688 554 MobiDBLite consensus disorder prediction 456 523 - -
Chy05g00688 554 MobiDBLite consensus disorder prediction 1 43 - -
Chy05g00688 554 SMART PP2C_4 45 447 IPR001932 -
Chy05g00688 554 Pfam Protein phosphatase 2C 320 424 IPR001932 -
Chy05g00688 554 Pfam Protein phosphatase 2C 190 272 IPR001932 -
Chy05g00688 554 CDD PP2Cc 62 449 IPR001932 -
Chy05g00688 554 PANTHER ALPHABET, ISOFORM E-RELATED 104 275 - -
Chy05g00688 554 PANTHER ALPHABET, ISOFORM E-RELATED 1 84 - -
Chy05g00688 554 PANTHER ALPHABET, ISOFORM E-RELATED 321 538 - -
Chy05g00688 554 ProSiteProfiles PPM-type phosphatase domain profile. 61 449 IPR001932 -
Chy05g00688 554 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 84 - -
Chy05g00688 554 SUPERFAMILY PP2C-like 61 450 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00380 Chy-Chr3:5269049 Chy05g00688 Chy-Chr5:8866348 4.75E-153 dispersed
Chy05g00688 Chy-Chr5:8866348 Chy06g01963 Chy-Chr6:23624897 1.74E-142 dispersed
Chy05g00688 Chy-Chr5:8866348 Chy05g01064 Chy-Chr5:15162792 1.05E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00688 - - csv:101222150 875.93