Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00712 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTTTCCCCTCAACACCAACCCGCCGACCACGCTCACGCCGCCGCCCCCTTCACCTCCGACCAAATCTCTCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGCTGTTTATGAACACTCTCAAGATTGGAATAATATGAAGGGTTTAGGGTCGACACAAAGTTCAGATTTTTCTGCTTTAATCGAAAGCCAACACCAACCAAAGCTTGAAAATTTCCTAGGCCACCACTCTTTCACTGACCACGACCACGACCACGCCACCGCTGCCGTCTACACCAATGCCTCCGCCAACTACATCTTCCAAAATTCTTCTTTGGACCTTCCATCGGAGGCTGCCGGCTGTGGCGGTGGAAGACCCAGCGCCGGTAACGGAAACGCCAACAATACTACCTCTATTGGTTTGTCGATGATTAAGACGTGGTTGAGGAATCAACCAGCGCCGCCTCAAGCGGTGGTCAAAGGCGGCGGAGATCACGACGGTAGTGCAGTTGGAATAAGTAATCATCTCACAACCGCACATACTTTATCACTGTCGATGAACACCGGTCCCCCACCGCCATCCCAGTCTTCGTCCGGCTCGGCGGCTCTACCACTTCTGACGGCCAGCGGCGGTGAAAGCTCCTCCTCCGATAACAAACAAGGGAAATCATCGGGTGCCGAGATCGACGCTGAAAATGGCGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGATACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGACAATAGTTGTAGACGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCTTACGATTTAGCAGCACTTAAATATTGGGGTACCACAACCACAACAAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGTGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGATCTCTACCTGGGAACTTTCGGTACGCAAGAAGAAGCAGCGGAAGCATATGACATAGCAGCTATAAAGTTTAGAGGATTAAATGCGGTGACCAACTTTGATATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGTAACACATTACCCATCGGCGGGGCTGCCAAGCGCCTAAAGGACATTCACCACTCTGACATCCCTCTCGACCCCCAAAGAGCAGAAGACAACATAACGTCACACCTCTCTGATGGAATAATAAATATTTCATCCACCACGACTCCTTACAGTGGCGGTGGATGGCCCACTATGGCCTTCCACCATCACCACCCTTACGCCTTCCACTACCCCTATGCGACTCCGCAACAACGAATGTGGTGCAAACAAGAACAGGACGCTACTGCTATCGCCGCCGACAACTTTTTCCCACATGGTGGGGCTATGGACTCAATTGACCATAGCTCGGGGTCTTACAGCAGTGCCAATGGAGATGGGTACAATGGAAACTTCTTGATTCCGATGGGGGCGGAAGGAAGCAGCAGCAACAATGGGGGATTAGGAGACATTGGAGAAGTGAATTTATTTGGTGGTTGTTCTAATGTGGATGATCCATTCCATGCAACAAGAACGTCAAATTTGTATAATTATCACAACTCCTCTCATCAGCTGCAACCGCCACCTCCGCCGTCGGGGCTGCAAGGCTCTAACTGCAACAACTGGCTTCCTCCGGCAAGGTCTGTTTGTCAGGGGGGAGCTCCACCACCTTTCACCATTTGGAATGACACTTAG 1944 49.74 MGSINWLGFSLSPQHQPADHAHAAAPFTSDQISPSDVSAVCFDNLPSSYAVYEHSQDWNNMKGLGSTQSSDFSALIESQHQPKLENFLGHHSFTDHDHDHATAAVYTNASANYIFQNSSLDLPSEAAGCGGGRPSAGNGNANNTTSIGLSMIKTWLRNQPAPPQAVVKGGGDHDGSAVGISNHLTTAHTLSLSMNTGPPPPSQSSSGSAALPLLTASGGESSSSDNKQGKSSGAEIDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIHHSDIPLDPQRAEDNITSHLSDGIINISSTTTPYSGGGWPTMAFHHHHPYAFHYPYATPQQRMWCKQEQDATAIAADNFFPHGGAMDSIDHSSGSYSSANGDGYNGNFLIPMGAEGSSSNNGGLGDIGEVNLFGGCSNVDDPFHATRTSNLYNYHNSSHQLQPPPPPSGLQGSNCNNWLPPARSVCQGGAPPPFTIWNDT* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9314823 9318668 - Chy5G097580.1 Chy05g00712 226939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00712 647 SMART rav1_2 260 332 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 SMART rav1_2 362 426 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 MobiDBLite consensus disorder prediction 601 623 - -
Chy05g00712 647 CDD AP2 361 422 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 MobiDBLite consensus disorder prediction 190 233 - -
Chy05g00712 647 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 MobiDBLite consensus disorder prediction 190 250 - -
Chy05g00712 647 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 530 - -
Chy05g00712 647 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677
Chy05g00712 647 Pfam AP2 domain 362 412 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 Pfam AP2 domain 260 318 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 SUPERFAMILY DNA-binding domain 259 328 IPR016177 GO:0003677
Chy05g00712 647 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 530 - -
Chy05g00712 647 CDD AP2 259 328 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 ProSiteProfiles AP2/ERF domain profile. 260 326 IPR001471 GO:0003700|GO:0006355
Chy05g00712 647 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700|GO:0006355
Chy05g00712 647 Gene3D AP2/ERF domain 260 328 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02231 Chy-Chr2:26384687 Chy05g00712 Chy-Chr5:9314823 1.71E-12 dispersed
Chy03g00967 Chy-Chr3:13208870 Chy05g00712 Chy-Chr5:9314823 1.45E-08 dispersed
Chy03g01615 Chy-Chr3:18090114 Chy05g00712 Chy-Chr5:9314823 1.43E-117 dispersed
Chy05g00119 Chy-Chr5:911728 Chy05g00712 Chy-Chr5:9314823 2.85E-133 dispersed
Chy05g00712 Chy-Chr5:9314823 Chy07g00211 Chy-Chr7:1699930 3.76E-115 dispersed
Chy05g00712 Chy-Chr5:9314823 Chy02g00817 Chy-Chr2:5154355 5.78E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18008 PF00847 AP2 1.50E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00712 K09285 - csv:101219473 1242.64