Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00713 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGACAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACAAGAGTATCCACTGTCCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAGAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACGTGATAAGATCCAGTCAGCTGCTTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTCGATCAAGATATGATAAATTTATTAGTTTCTGATGACGAAAAAAAGAAGTACTTTCGTTATTTTATTCGATCCTATGTTGAAGACAATCGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCGTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGCAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCG 1176 42.69 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVDQDMINLLVSDDEKKKYFRYFIRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9450648 9472725 + Chy5G097590.1 Chy05g00713 226940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00713 392 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Chy05g00713 392 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 392 - -
Chy05g00713 392 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Chy05g00713 392 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Chy05g00713 392 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Chy05g00713 392 Gene3D - 273 392 - -
Chy05g00713 392 MobiDBLite consensus disorder prediction 1 56 - -
Chy05g00713 392 SUPERFAMILY RING/U-box 216 284 - -
Chy05g00713 392 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 392 IPR031127 GO:0004842|GO:0016567
Chy05g00713 392 SUPERFAMILY RING/U-box 143 224 - -
Chy05g00713 392 SMART ibrneu5 215 277 IPR002867 -
Chy05g00713 392 SMART ibrneu5 281 351 IPR002867 -
Chy05g00713 392 MobiDBLite consensus disorder prediction 1 58 - -
Chy05g00713 392 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Chy05g00713 392 SUPERFAMILY RING/U-box 296 344 - -
Chy05g00713 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00713 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00386 Chy-Chr3:5373605 Chy05g00713 Chy-Chr5:9450648 0 dispersed
Chy05g00713 Chy-Chr5:9450648 Chy11g00408 Chy-Chr11:3942825 2.73E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00408 . 164 590 ARIADNE family AT4G34370 72.7 2.0e-184 642.1
Chy11g00408 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Chy11g00408 . 28 543 ARIADNE family AT3G27710 61.9 1.0e-185 646.7
Chy11g00408 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Chy03g00386 . 69 563 ARIADNE family AT1G05890 68.7 2.7e-208 721.8
Chy05g00713 . 1 391 ARIADNE family AT1G05890 60.7 1.3e-154 543.5
Chy05g00715 . 1 139 ARIADNE family AT1G05890 69.8 2.3e-50 197.2
Chy03g00386 . 67 622 ARIADNE family AT1G65430 66.5 5.3e-230 793.9
Chy05g00713 . 20 392 ARIADNE family AT1G65430 74.4 4.4e-176 614.8
Chy05g00715 . 1 195 ARIADNE family AT1G65430 69.2 2.1e-69 260.4
Chy03g00386 . 69 488 ARIADNE family AT2G31780 53.7 2.5e-134 475.7
Chy05g00713 . 9 392 ARIADNE family AT2G31780 51.9 1.1e-121 433.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00713 Chy_Chr05 FPKM 11.849722 12.464148 8.645583 9.07206 20.67605 19.37772 21.31543 14.122574 13.770078 13.367878