Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00713 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGACAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACAAGAGTATCCACTGTCCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAGAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACGTGATAAGATCCAGTCAGCTGCTTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTCGATCAAGATATGATAAATTTATTAGTTTCTGATGACGAAAAAAAGAAGTACTTTCGTTATTTTATTCGATCCTATGTTGAAGACAATCGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCGTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGCAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCG 1176 42.69 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVDQDMINLLVSDDEKKKYFRYFIRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9450648 9472725 + Chy5G097590.1 Chy05g00713 226940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00713 392 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Chy05g00713 392 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 392 - -
Chy05g00713 392 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Chy05g00713 392 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 -
Chy05g00713 392 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Chy05g00713 392 Gene3D - 273 392 - -
Chy05g00713 392 MobiDBLite consensus disorder prediction 1 56 - -
Chy05g00713 392 SUPERFAMILY RING/U-box 216 284 - -
Chy05g00713 392 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 392 IPR031127 GO:0004842|GO:0016567
Chy05g00713 392 SUPERFAMILY RING/U-box 143 224 - -
Chy05g00713 392 SMART ibrneu5 215 277 IPR002867 -
Chy05g00713 392 SMART ibrneu5 281 351 IPR002867 -
Chy05g00713 392 MobiDBLite consensus disorder prediction 1 58 - -
Chy05g00713 392 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Chy05g00713 392 SUPERFAMILY RING/U-box 296 344 - -
Chy05g00713 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00386 Chy-Chr3:5373605 Chy05g00713 Chy-Chr5:9450648 0 dispersed
Chy05g00713 Chy-Chr5:9450648 Chy11g00408 Chy-Chr11:3942825 2.73E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00713 K11968 - csv:101218052 770.77