Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00715 ATGCAGATCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTCAATCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACATATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGCTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGCCCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTTCGTGCACTTGAGAACGGTCTGTCGGATGTTGATTCCCTCGGTACCTGCAGCAAAACATCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTAGTGGTTCTAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTTAAGTCAGCTACATTCTGCCAGATGTGCCAACAACGGCGATAG 585 44.27 MQIVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSLGTCSKTSSSKSTGGCRSKGGKGKMSAFRGSGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9483028 9485966 + Chy5G097610.1 Chy05g00715 226942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00715 194 SMART zf_4 169 193 IPR001876 -
Chy05g00715 194 MobiDBLite consensus disorder prediction 132 163 - -
Chy05g00715 194 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 146 IPR031127 GO:0004842|GO:0016567
Chy05g00715 194 SUPERFAMILY Ran binding protein zinc finger-like 167 194 IPR036443 -
Chy05g00715 194 Gene3D - 166 194 - -
Chy05g00715 194 ProSitePatterns Zinc finger RanBP2-type signature. 171 190 IPR001876 -
Chy05g00715 194 ProSiteProfiles Zinc finger RanBP2 type profile. 167 194 IPR001876 -
Chy05g00715 194 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 146 - -
Chy05g00715 194 Gene3D - 2 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00715 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 380.948
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00408 . 164 590 ARIADNE family AT4G34370 72.7 2.0e-184 642.1
Chy11g00408 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Chy11g00408 . 28 543 ARIADNE family AT3G27710 61.9 1.0e-185 646.7
Chy11g00408 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Chy03g00386 . 69 563 ARIADNE family AT1G05890 68.7 2.7e-208 721.8
Chy05g00713 . 1 391 ARIADNE family AT1G05890 60.7 1.3e-154 543.5
Chy05g00715 . 1 139 ARIADNE family AT1G05890 69.8 2.3e-50 197.2
Chy03g00386 . 67 622 ARIADNE family AT1G65430 66.5 5.3e-230 793.9
Chy05g00713 . 20 392 ARIADNE family AT1G65430 74.4 4.4e-176 614.8
Chy05g00715 . 1 195 ARIADNE family AT1G65430 69.2 2.1e-69 260.4
Chy03g00386 . 69 488 ARIADNE family AT2G31780 53.7 2.5e-134 475.7
Chy05g00713 . 9 392 ARIADNE family AT2G31780 51.9 1.1e-121 433.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00715 Chy_Chr05 FPKM 16.707605 19.240421 24.722631 26.819706 33.001381 29.594547 32.110188 28.472069 26.653017 33.666737