Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00740 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGATTCCCCTTCTCGGCTCTTCAGTCACCACGAACTCCACCGCGGTAGCCGAGTTTCTATGCTCCAGATTCACCACAATAGCCTCCACTTTCAGCTCCACCACCTATGCCGTCGACAACAGCTACCTTCTCTTTTCAGCCTACCTCGTCTTTGCCATGCAGCTTGGCTTTGCCATGCTTTGTGCCGGCTCCGTCCGGGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTTGATGCCGCTGCCGGAGGCCTCTCCTACTACCTCTTTGGTTTCGCCTTTGCCTTCGGTGCTCCCTCCAACTCCTTCATAGGCCGCCATTTTTTTGACCTCTCCAGTGTTCCTAACCCCTCTACTGACTATAGCTTTTTTCTCTATCAATGGGCCTTTGCTATTGCTGCTGCAGGTATCACCAGTGGCTCCATAGCTGAACGAACCCAATTTGTGGCCTATCTCATCTACTCCACTGTTCTAACTGGCTTCATCTACCCTATAGTCTCCCATTGGTTTTGGTCTGCTGATGGGTGGGCTAGCCCAACACGACCCAACAACCTCCTATTCAACTCAGGTGCAATCGACTTTGCCGGGTCTGGTGTGGTCCACATGGTTGGTGGTGTAGCCGGTCTCTGGGGAGCTTTAATCGAAGGCCCAAGAATCGGTCGATTTGATCGATCCGGTCGATCTGTCGCCCTTCGCGGCCACAGTGCATCACTCGTAGTCCTCGGCTCCTTCCTCCTTTGGTTCGGCTGGTATGGGTTCAACCCCGGTTCATTCCTAACAATTTCCAAGTCCTACAATGATGGTCGTCCTTACTATGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTTTTCGCAAAGCGTCTCTTAGTCGGCCATTGGAACGTAATCGACGTGTGCAACGGCCTATTAGGGGGGTTCGCCGCCATCACATCTGGTTGTGCTGTGGTGGAGCCATGGGCGGCAGTGTTATGTGGTTTCGTAGCATCTTGGGTGTTAATTGGGTTCAACAAGCTAGCGGAGAGGCTGAGCTTCGACGACCCATTAGAAGCGGCACAATTGCATGGCGGGTGTGGGGCATGGGGTTTGATATTCACAGGACTATTTGCGACAAAGAAATACGTCGGGGAGGTATATCAAGTCGGGCGGCCTTACGGATTGCTGATGGGTGGGGGATGGAGGCTATTGGCAGCACAAGTGGTAGAAATTGTAGCGATATTTGGGTGGGTGTCTTTGACAATGGGAGGGTTGTTTTATGGGTTGATGAAAGGGAAACTATTGAGAATATCAAGGGAGGATGAAATGGCAGGGATGGATTTAACGCGACATGGGGGATTTGCTTATGTATATAATGATGAAGAAGATTTATCAGAGAAGGCGTCTGGGTTTGTGATGAGGAGAATTGAGCCTGCTGATGCTAGTTCTCCTAAGGACCATTCTTCTTCTGGGATAGAGGCTGTTTGA 1536 51.11 MATLSCQPSDLIPLLGSSVTTNSTAVAEFLCSRFTTIASTFSSTTYAVDNSYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFIYPIVSHWFWSADGWASPTRPNNLLFNSGAIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVLCGFVASWVLIGFNKLAERLSFDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQVGRPYGLLMGGGWRLLAAQVVEIVAIFGWVSLTMGGLFYGLMKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKASGFVMRRIEPADASSPKDHSSSGIEAV* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10210856 10213173 + Chy5G097860.1 Chy05g00740 226967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00740 511 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy05g00740 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy05g00740 511 SUPERFAMILY Ammonium transporter 46 451 - -
Chy05g00740 511 Pfam Ammonium Transporter Family 53 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Chy05g00740 511 PANTHER AMMONIUM TRANSPORTER 5 501 - -
Chy05g00740 511 Gene3D Ammonium transporter AmtB like domains 30 490 IPR029020 -
Chy05g00740 511 PANTHER AMMONIUM TRANSPORTER 5 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01131 Chy-Chr4:17483576 Chy05g00740 Chy-Chr5:10210856 0 dispersed
Chy05g00740 Chy-Chr5:10210856 Chy06g00417 Chy-Chr6:2834934 0 dispersed
Chy05g00737 Chy-Chr5:10134281 Chy05g00740 Chy-Chr5:10210856 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00740 K03320 K07573 csv:101217871 978.393