Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00772 ATGAATGTTAAAGTGTTGTTGCTTCGGCAAATCCCAGATAGAGTTCTTGATATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTTGAGAAGGTGCACAATCTTGATAAACAAGACAGTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAACCACAACCAGTTAAAGTGGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTAAACTATAAACAATATGATTACTGCTCTGATGACGAGATTAATAGTACTAATTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGTCAAAAGGTGGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGAGAATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAAGGTTCTAAATTTGTAACTCGTGTCCAAAGAATTGATAAGCTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACCACGTTAAATGGAAAAATTGCAGATGCTGGCTCTGTTGAGGCCGAGAGATTTGGATTTGATCCTGGTCCTGATTTTACCTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTTGTAAGCCACTCATCGATACTGCGAAGGATTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAAAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGCTCTGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACGCAACTTTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAGTGTGTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTATTGAGATGGAACGTGCAAGGAGGAACTTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCGGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTTTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCAATCTTCGTTATTACCAACACTAACTGCTTTAAACAGTTCTCATCATGCACAAAAGTTATCTGAAGTTACTACCTCTTTTTTAGAAGTTAAGAAGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCAGCAAAATCATAAAATAGAGGTGAAAAAAGAAAGCCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATACTCTGAATAAGATAGAAGTGAAAAGTACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGACCATAAGAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGGTGGGAAATTCAGATCGATTCATTGAGATTGATTCTAAGACTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCACACTCCGGCGACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGTCAATCGAGGATTGTACCTTTATATAGTAAAAAGTCTCAAAACAGTAACCTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTCAGATTCGGGATTAGGTCATAGTAATAGAGAATTTCTAGAGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAACGAGGGTACTCATGGAAATGCAGGAATGAGTGCTACATCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATATGGATAGATTCATTAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATTGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAAGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTTGGATTTACTTCACCGTCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATATAGTACTTGGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCATGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3759 41.02 MNVKVLLLRQIPDRVLDMGTELIRVCVEDDSDDFPSVPPGFESYISFSLEKVHNLDKQDSHAPPVSLPTVSEPQPVKVGSEVEVPKVAKVTRSLRRKPCVNYKQYDYCSDDEINSTNCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLENAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRVCSQMRRKRRRCNRKGVDVTTLNGKIADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFCKPLIDTAKDCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNSVCGKDGILARAFKTRIEMERARRNFPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSFQSSTKSHGNPQWKELLRQSSLLPTLTALNSSHHAQKLSEVTTSFLEVKKEISTVNGSEKEIGQQNHKIEVKKESHDLVATNSRHADSQSCKEDTNTLNKIEVKSTTDKMCPENVILLSDDEGDDHKKTISNGLAESSSVKQVGNSDRFIEIDSKTSLCNYNENAILHTPATDATTMGDKEVNLLIEKRLNNCQSRIVPLYSKKSQNSNLSVRNAANAIQNNTCSDSGLGHSNREFLESTDTDCQKPQTCGSGKLNEGTHGNAGMSATSCVLDSSRTTANLSCNQANMDRFIRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVKFINVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPSIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDIVLGGLLKKANLEELSSLYTLLNDNRPTVDQGMLARLLNEEIQSHRR* 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10889244 10898481 + Chy5G098180.1 Chy05g00772 226999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00772 1252 Gene3D Cupin 148 527 - -
Chy05g00772 1252 Gene3D - 1025 1161 - -
Chy05g00772 1252 ProSiteProfiles FYR domain FYRN motif profile. 1017 1075 IPR003888 GO:0005634
Chy05g00772 1252 PANTHER JUMONJI 14-RELATED 788 1249 - -
Chy05g00772 1252 PANTHER JUMONJI 14-RELATED 96 790 - -
Chy05g00772 1252 SMART JmjN_1 162 203 IPR003349 -
Chy05g00772 1252 SUPERFAMILY Clavaminate synthase-like 378 570 - -
Chy05g00772 1252 ProSiteProfiles JmjC domain profile. 377 543 IPR003347 -
Chy05g00772 1252 ProSiteProfiles JmjN domain profile. 163 204 IPR003349 -
Chy05g00772 1252 PANTHER LYSINE-SPECIFIC DEMETHYLASE 96 790 - -
Chy05g00772 1252 Pfam F/Y-rich N-terminus 1032 1072 IPR003888 GO:0005634
Chy05g00772 1252 PANTHER LYSINE-SPECIFIC DEMETHYLASE 788 1249 - -
Chy05g00772 1252 Pfam F/Y rich C-terminus 1079 1163 IPR003889 GO:0005634
Chy05g00772 1252 SMART cupin_9 377 543 IPR003347 -
Chy05g00772 1252 Pfam JmjC domain, hydroxylase 410 526 IPR003347 -
Chy05g00772 1252 Pfam jmjN domain 164 197 IPR003349 -
Chy05g00772 1252 ProSiteProfiles FYR domain FYRC motif profile. 1077 1167 IPR003889 GO:0005634
Chy05g00772 1252 Pfam C5HC2 zinc finger 633 683 IPR004198 -
Chy05g00772 1252 SMART fyrn_3 1031 1075 IPR003888 GO:0005634
Chy05g00772 1252 SMART fyrc_3 1081 1175 IPR003889 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00772 - - - csv:101208186 2482.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01475 Chy-Chr1:20497470 Chy05g00772 Chy-Chr5:10889244 0 dispersed
Chy05g00772 Chy-Chr5:10889244 Chy12g00459 Chy-Chr12:5709409 6.00E-44 dispersed
Chy05g00772 Chy-Chr5:10889244 Chy06g02167 Chy-Chr6:25943311 7.48E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00772 . 18 1251 JUMONJI Transcription Factor Family AT1G08620 55.0 0.0e+00 1268.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18013 PF02373 JmjC 6.90E-45 CL0029 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00772 Chy_Chr05 FPKM 0.018029 0.0 0.0 0.0 0.0 0.004743 0.003659 0.0 0.002537 0.005347
Chy05g00772 Chy_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Chy05g00772 Chy_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Chy05g00772 Chy_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Chy05g00772 Chy_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Chy05g00772 Chy_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.006927 0.0 0.009721 0.0
Chy05g00772 Chy_Chr00 FPKM 0.0 0.006881 0.0 0.0 0.0 0.0 0.0 0.0 0.002775 0.002923