Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00772 ATGAATGTTAAAGTGTTGTTGCTTCGGCAAATCCCAGATAGAGTTCTTGATATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTTGAGAAGGTGCACAATCTTGATAAACAAGACAGTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAACCACAACCAGTTAAAGTGGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTAAACTATAAACAATATGATTACTGCTCTGATGACGAGATTAATAGTACTAATTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGTCAAAAGGTGGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGAGAATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAAGGTTCTAAATTTGTAACTCGTGTCCAAAGAATTGATAAGCTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACCACGTTAAATGGAAAAATTGCAGATGCTGGCTCTGTTGAGGCCGAGAGATTTGGATTTGATCCTGGTCCTGATTTTACCTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTTGTAAGCCACTCATCGATACTGCGAAGGATTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAAAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGCTCTGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACGCAACTTTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAGTGTGTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTATTGAGATGGAACGTGCAAGGAGGAACTTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCGGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTTTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCAATCTTCGTTATTACCAACACTAACTGCTTTAAACAGTTCTCATCATGCACAAAAGTTATCTGAAGTTACTACCTCTTTTTTAGAAGTTAAGAAGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCAGCAAAATCATAAAATAGAGGTGAAAAAAGAAAGCCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATACTCTGAATAAGATAGAAGTGAAAAGTACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGACCATAAGAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGGTGGGAAATTCAGATCGATTCATTGAGATTGATTCTAAGACTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCACACTCCGGCGACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGTCAATCGAGGATTGTACCTTTATATAGTAAAAAGTCTCAAAACAGTAACCTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTCAGATTCGGGATTAGGTCATAGTAATAGAGAATTTCTAGAGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAACGAGGGTACTCATGGAAATGCAGGAATGAGTGCTACATCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATATGGATAGATTCATTAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATTGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAAGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTTGGATTTACTTCACCGTCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATATAGTACTTGGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCATGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3759 41.02 MNVKVLLLRQIPDRVLDMGTELIRVCVEDDSDDFPSVPPGFESYISFSLEKVHNLDKQDSHAPPVSLPTVSEPQPVKVGSEVEVPKVAKVTRSLRRKPCVNYKQYDYCSDDEINSTNCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLENAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRVCSQMRRKRRRCNRKGVDVTTLNGKIADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFCKPLIDTAKDCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNSVCGKDGILARAFKTRIEMERARRNFPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSFQSSTKSHGNPQWKELLRQSSLLPTLTALNSSHHAQKLSEVTTSFLEVKKEISTVNGSEKEIGQQNHKIEVKKESHDLVATNSRHADSQSCKEDTNTLNKIEVKSTTDKMCPENVILLSDDEGDDHKKTISNGLAESSSVKQVGNSDRFIEIDSKTSLCNYNENAILHTPATDATTMGDKEVNLLIEKRLNNCQSRIVPLYSKKSQNSNLSVRNAANAIQNNTCSDSGLGHSNREFLESTDTDCQKPQTCGSGKLNEGTHGNAGMSATSCVLDSSRTTANLSCNQANMDRFIRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVKFINVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPSIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDIVLGGLLKKANLEELSSLYTLLNDNRPTVDQGMLARLLNEEIQSHRR* 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10889244 10898481 + Chy5G098180.1 Chy05g00772 226999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00772 1252 Gene3D Cupin 148 527 - -
Chy05g00772 1252 Gene3D - 1025 1161 - -
Chy05g00772 1252 ProSiteProfiles FYR domain FYRN motif profile. 1017 1075 IPR003888 GO:0005634
Chy05g00772 1252 PANTHER JUMONJI 14-RELATED 788 1249 - -
Chy05g00772 1252 PANTHER JUMONJI 14-RELATED 96 790 - -
Chy05g00772 1252 SMART JmjN_1 162 203 IPR003349 -
Chy05g00772 1252 SUPERFAMILY Clavaminate synthase-like 378 570 - -
Chy05g00772 1252 ProSiteProfiles JmjC domain profile. 377 543 IPR003347 -
Chy05g00772 1252 ProSiteProfiles JmjN domain profile. 163 204 IPR003349 -
Chy05g00772 1252 PANTHER LYSINE-SPECIFIC DEMETHYLASE 96 790 - -
Chy05g00772 1252 Pfam F/Y-rich N-terminus 1032 1072 IPR003888 GO:0005634
Chy05g00772 1252 PANTHER LYSINE-SPECIFIC DEMETHYLASE 788 1249 - -
Chy05g00772 1252 Pfam F/Y rich C-terminus 1079 1163 IPR003889 GO:0005634
Chy05g00772 1252 SMART cupin_9 377 543 IPR003347 -
Chy05g00772 1252 Pfam JmjC domain, hydroxylase 410 526 IPR003347 -
Chy05g00772 1252 Pfam jmjN domain 164 197 IPR003349 -
Chy05g00772 1252 ProSiteProfiles FYR domain FYRC motif profile. 1077 1167 IPR003889 GO:0005634
Chy05g00772 1252 Pfam C5HC2 zinc finger 633 683 IPR004198 -
Chy05g00772 1252 SMART fyrn_3 1031 1075 IPR003888 GO:0005634
Chy05g00772 1252 SMART fyrc_3 1081 1175 IPR003889 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01475 Chy-Chr1:20497470 Chy05g00772 Chy-Chr5:10889244 0 dispersed
Chy05g00772 Chy-Chr5:10889244 Chy12g00459 Chy-Chr12:5709409 6.00E-44 dispersed
Chy05g00772 Chy-Chr5:10889244 Chy06g02167 Chy-Chr6:25943311 7.48E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18013 PF02373 JmjC 6.90E-45 CL0029 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00772 - - csv:101208186 2482.6