Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy05g00814 | ATGGCTTCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAATGTGTTTTTGCGCCGTATTTTCCACCGGATCAGCCTCAGAAATTCGCAAATGTTCATAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTGCATCCTCACCAGAGAGAAGACGCTGTCAATTCGCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACCTAGGGATTGGTAACCACGCTACCCTGATTTCGCCGCCTTCCACCCTTTCTACCGTCCCTCATGGACAGAGAAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGTCTTTATCACGACCAATTTTTCCCTCGAGATCAACAACAGATGATGCTACGACGGAACTTCGACGGCGGTAGCAACTACGACGGACTTTTGGCCGTTAATGTCACCGCAAGTATCGGTAACCTCAGCCACCAGTTGCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGCGAAAGGAGACGTTTTGAATATGCATTGTGTTCGACCATGCTCTGATACTTCTGACGACGAGTCATGTTATAATGATTGCATCCGAGAGAATCTTGGTGCTGCGTTTTGTTACCCAAAGCTACCAAGCACTGATAAAGATTGCTGCTGCAATGTATAA | 789 | 48.42 | MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHATLISPPSTLSTVPHGQRNHQPAFNFARDQPHSLYHDQFFPRDQQQMMLRRNFDGGSNYDGLLAVNVTASIGNLSHQLQQTRAAAGDDRRAKGDVLNMHCVRPCSDTSDDESCYNDCIRENLGAAFCYPKLPSTDKDCCCNV* | 263 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11625989 | 11630293 | - | Chy5G098600.1 | Chy05g00814 | 227041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy05g00814 | 262 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - | |
| Chy05g00814 | 262 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 3 | 180 | - | - | |
| Chy05g00814 | 262 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 3 | 180 | - | - | |
| Chy05g00814 | 262 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g02604 | Chy-Chr2:29255861 | Chy05g00814 | Chy-Chr5:11625989 | 4.64E-60 | dispersed | |
| Chy03g00195 | Chy-Chr3:1805672 | Chy05g00814 | Chy-Chr5:11625989 | 3.81E-49 | dispersed | |
| Chy04g01431 | Chy-Chr4:20958581 | Chy05g00814 | Chy-Chr5:11625989 | 3.28E-58 | dispersed | |
| Chy05g00807 | Chy-Chr5:11556197 | Chy05g00814 | Chy-Chr5:11625989 | 2.08E-29 | dispersed | |
| Chy05g00808 | Chy-Chr5:11561443 | Chy05g00814 | Chy-Chr5:11625989 | 4.46E-30 | dispersed | |
| Chy05g00812 | Chy-Chr5:11601264 | Chy05g00814 | Chy-Chr5:11625989 | 3.00E-29 | dispersed | |
| Chy05g00814 | Chy-Chr5:11625989 | Chy12g01247 | Chy-Chr12:17109983 | 2.09E-47 | dispersed | |
| Chy09g00277 | Chy-Chr9:2327540 | Chy05g00814 | Chy-Chr5:11625989 | 1.61E-30 | dispersed | |
| Chy05g00813 | Chy-Chr5:11623849 | Chy05g00814 | Chy-Chr5:11625989 | 3.67E-28 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18014 | PF03195 | LOB | 6.40E-43 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy05g00814 | - | - | csv:101203281 | 418.313 |