Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00832 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCATAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCGAAACCGTTGAAGAATTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGCAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTCCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGACGAAGAAAACACACAGTATGGAAGATCACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTACGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTCAAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTACAGCAAGGGAATCTTGGGCCTGAACCTGATGATGGCTATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCGAGCAAAATTAATCCATACCGGATGGTTATTGTAGCCCGACTCGTTATTCTTGCTTTCTTCCTTCGATACCGAATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGCGAAATCTGGTTTGCATTTTCATGGATTCTTGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGATTATCCAGTTGATAAGATTTCATGTTACATTTCGGACGATGGAGCTTCCATGCTTACTTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGTCGAGCAATGAAGAGAGAGTACGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAATTCCCACAGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAATACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTAGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGCGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTGTGCTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATGTAAATAACCCATCTCCGAAAGTTCATGCATACTTGTTCAACTGA 1809 43.17 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDAVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENTQYGRSQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSQRWDEKREEGWKDRMDDWKLQQGNLGPEPDDGYDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYISDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKIPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDVNNPSPKVHAYLFN* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11941814 11944432 - Chy5G098780.1 Chy05g00832 227059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00832 602 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Chy05g00832 602 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Chy05g00832 602 MobiDBLite consensus disorder prediction 132 169 - -
Chy05g00832 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Chy05g00832 602 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 601 IPR029044 -
Chy05g00832 602 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 590 - -
Chy05g00832 602 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 590 - -
Chy05g00832 602 Pfam Cellulose synthase 327 590 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy05g00832 602 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Chy05g00832 602 MobiDBLite consensus disorder prediction 144 168 - -
Chy05g00832 602 SUPERFAMILY RING/U-box 21 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00832 Chy-Chr5:11941814 Chy04g00357 Chy-Chr4:3161093 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00832 K10999 - csv:101214842 1204.89