Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00853 GGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTCGTCATTGTTGTAACAGCTATTAGTGACTATCGACAATCTCTTCAATTCCAGAACTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATTGTTGTTGGCGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGGCACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCATTCTTGATGTCTGGATGCAAAGTAGCTGATGGTAACGGCACCATGCTGGTTACGAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACTGTAGCTTTTGCTGTCCTGGTTGTGCTCCTTGCAAGATATTTCACTGGTCACTCAAAAAATCCAGATGGAAGCCGTCAGTTTATTGCCGGCCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTCACCATTGTTGTGGTTGCTGTGCCGGAAGGGCTTCCACTCGCTGTTACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTGTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCACCAGAAAAGAAGTCAGAGTTGTCTCCCACATTACACTCTTTACTTGTTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTGTATGTGCCTGAGAGTGGTGGAGAAGTGGAGGTGACAGGATCACCTACTGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTCAGATCAGAATCTACAATTCTTCATGTTTTTCCCTTCAGCTCCGATAAAAAACGTGGTGGTGTTGCATGTCAACAGGATAATCAAGTCCATGTACACTGGAAAGGTGCTGCTGAGCTAGTCTTGGCATCGTGCGCACAGTATATGGATGAACATGATCAATTTGTTCAATTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATTGAGGATATGGCTTCACGTAGCCTACGTTGTGTTGCAATTGCTTATAGACCTGTTGATCCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGAAGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAAGATGCAGTACGACTTTGCCAAAATGCTGGTGTTAAGGTACGAATGGTGACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTACGTGCCTTGGATACTATTGACCCTTCTCTTAACACACACACGGAAAGGGAAAAACTACAATACAAAGCAATTTGTAGAATGCGCGTGCTTGTATTAAGACTAATAATTGAGATTGACTTAAACCTTTCTGATTCTTTTAAGGTGATGGGACGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGCTGAGAAAGAGAGGTCATGTAGTTGCTGTTACTGGAGACGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGTCTTGCCATGGGTATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAAAAATTCATTCAGTTTCAGCTTACTGTTAATGTTGCAGCACTCATTATCAATGTCGTGGCAGCAATATCCTCTGGTGGTGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACACTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTTATGGACAGGCCGCCAGTTGGTAGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAACCTGCTGATACAGGCATTTTATCAAGTCACGGTGCTGCTTGTCCTCAACTTCCGTGGTCGGAGTTTGCTTCATTTGAATCACTCTAAGTTCGAAGCTATCAAACTGCAGAATACGTTGATTTTCAATGCATTTGTACTTTGCCAAATTTTCAATGAGTTCAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACGAAGAATTACCTCTTTATTGGTATCATTGCAATTACTGTTATCCTCCAGGTGATAATCATCGAGTTTCTTGGGAAATTCACATCCACGGTTAGGCTAAATTGGAAATATTGGATTATTTCAATAATTATTGGCCTTATCAGTTGGCCTCTAGCTTTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGCAAACGACAACCCGGGCAACCATAA 2721 42.23 GIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGNGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLARYFTGHSKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTVNQMTIVEAYAGGKKIDPPEKKSELSPTLHSLLVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRSESTILHVFPFSSDKKRGGVACQQDNQVHVHWKGAAELVLASCAQYMDEHDQFVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVDPENVPDGEEQLSKWALPEEDLVLLAIVGLKDPCRPGVKDAVRLCQNAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVRALDTIDPSLNTHTEREKLQYKAICRMRVLVLRLIIEIDLNLSDSFKVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGGVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRPPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSKFEAIKLQNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGLISWPLAFLGKFIPVPETPFHVLIIRMFRKRQPGQP* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12274184 12286009 - Chy5G098990.1 Chy05g00853 227080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00853 906 Gene3D - 118 291 - -
Chy05g00853 906 SUPERFAMILY Calcium ATPase, transduction domain A 44 140 IPR008250 -
Chy05g00853 906 PANTHER CALCIUM-TRANSPORTING ATPASE 588 895 - -
Chy05g00853 906 Pfam E1-E2 ATPase 44 245 - -
Chy05g00853 906 SUPERFAMILY HAD-like 265 727 IPR036412 -
Chy05g00853 906 SFLD p-type atpase 249 674 IPR044492 -
Chy05g00853 906 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 274 471 IPR023299 GO:0000166
Chy05g00853 906 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 3 522 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Chy05g00853 906 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 592 703 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g00853 906 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 12 183 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g00853 906 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 207 290 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g00853 906 Gene3D - 23 117 - -
Chy05g00853 906 PANTHER CALCIUM-TRANSPORTING ATPASE 1 549 - -
Chy05g00853 906 ProSitePatterns E1-E2 ATPases phosphorylation site. 269 275 IPR018303 -
Chy05g00853 906 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 885 IPR023298 -
Chy05g00853 906 Gene3D - 317 471 IPR023299 GO:0000166
Chy05g00853 906 Gene3D - 634 887 - -
Chy05g00853 906 PANTHER CATION TRANSPORTING ATPASE 588 895 - -
Chy05g00853 906 PRINTS Sodium/potassium-transporting ATPase signature 10 30 - -
Chy05g00853 906 PRINTS Sodium/potassium-transporting ATPase signature 385 403 - -
Chy05g00853 906 PRINTS Sodium/potassium-transporting ATPase signature 260 281 - -
Chy05g00853 906 Pfam Cation transporting ATPase, C-terminus 707 883 IPR006068 -
Chy05g00853 906 PRINTS P-type cation-transporting ATPase superfamily signature 267 281 - -
Chy05g00853 906 PRINTS P-type cation-transporting ATPase superfamily signature 622 641 - -
Chy05g00853 906 PRINTS P-type cation-transporting ATPase superfamily signature 646 658 - -
Chy05g00853 906 PRINTS P-type cation-transporting ATPase superfamily signature 91 105 - -
Chy05g00853 906 PANTHER CATION TRANSPORTING ATPASE 1 549 - -
Chy05g00853 906 Gene3D - 472 527 IPR023214 -
Chy05g00853 906 SFLD C1.7: P-type atpase like 249 674 - -
Chy05g00853 906 Pfam Cation transport ATPase (P-type) 319 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02112 Chy-Chr1:25821173 Chy05g00853 Chy-Chr5:12274184 0 dispersed
Chy05g00853 Chy-Chr5:12274184 Chy07g00189 Chy-Chr7:1548092 0 dispersed
Chy05g00853 Chy-Chr5:12274184 Chy03g01604 Chy-Chr3:17967781 1.97E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00853 K01537 - csv:101211703 1590.47