Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00866 ATGGAGAACATTCTGGATGAGTATAGCTATTACTGGGAAACCAATATGTTTCTCCAAACCGAAGATTTGGACAGTTGGGGATTAGATGAAGCATTTTATGGTTCTTATGATTCGAGCTCACCGGACGGAACGTTGTCATCGTCAGAGGCGTCGAAGAATATCTTATCGGAGAGGAATCGGAGGAAGAAGCTTAATGATAGGCTTCTTGCTCTCAGAGCCGTCGTCCCTAATATCACCAAAATGGATAAGGCATCAATAATAAAAGATGCGATCGGATATATCCAAGAGCTCCGAGCAGAAGAAAATCAAATCGAAACAGAGATTTCAAATATACAATCAAACAAATTCAAGAGCACAACATCAAATGAAGACGACAATTATGAAAACAACAATCAAAATACAAGGAAGAGGGGAGCAAAGAATTGTAATAGACAAATACGAGAGAAGCCATCGTCTTTCCCGATCCAAATTCTCGACTTGAACGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTATGACGTGTCAAAGGAGAAACGACGCCGCATTTAAAATTTGTCAAGTGATTGAATCTTTGAAGCTGAAGATTATTACGGCCAATATTACCGTCGTTGCCAATAGGCTTCTCAGTACGCTCTTCCTTGAGGCAGAGAGAGCAGAAGAAGAGGAACTAAAG 678 40.86 MENILDEYSYYWETNMFLQTEDLDSWGLDEAFYGSYDSSSPDGTLSSSEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIGYIQELRAEENQIETEISNIQSNKFKSTTSNEDDNYENNNQNTRKRGAKNCNRQIREKPSSFPIQILDLNVNYMGEKTMVVSMTCQRRNDAAFKICQVIESLKLKIITANITVVANRLLSTLFLEAERAEEEELK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12681316 12688962 - Chy5G099120.1 Chy05g00866 227093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00866 226 MobiDBLite consensus disorder prediction 38 53 - -
Chy05g00866 226 Gene3D - 45 114 IPR036638 GO:0046983
Chy05g00866 226 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 226 - -
Chy05g00866 226 PANTHER TRANSCRIPTION FACTOR BHLH35 1 226 - -
Chy05g00866 226 MobiDBLite consensus disorder prediction 115 137 - -
Chy05g00866 226 Coils Coil 94 114 - -
Chy05g00866 226 SMART finulus 54 103 IPR011598 GO:0046983
Chy05g00866 226 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Chy05g00866 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 112 IPR036638 GO:0046983
Chy05g00866 226 MobiDBLite consensus disorder prediction 38 57 - -
Chy05g00866 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00866 Chy-Chr5:12681316 Chy11g00848 Chy-Chr11:11964100 1.68E-20 dispersed
Chy11g01724 Chy-Chr11:23669055 Chy05g00866 Chy-Chr5:12681316 2.23E-13 dispersed
Chy02g02257 Chy-Chr2:26656731 Chy05g00866 Chy-Chr5:12681316 2.03E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18017 PF00010 HLH 5.20E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00866 - - csv:101203107 362.844