Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00883 ATGAGTGAGGAGGCAACGGAGAAGATGAATAAGAAAGTAATAAAAGAAAACAAAAAATTGGAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAATCCCTTTGATTGAAAACATCCTCAAACCCCTCCAAGGAATCAAACAAATCACTGTCATTGTCCCTACAAGAACTCTCATTGTTGTTCATGATTCCCTTCTCATTTCCCAACTTCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATATACAATTAAAAGGAAAGGGAATTATGAAGAAGAAATGGCCAAGTCCTTATGCAATAGCCAGTGGGTTGCTTCTAACTGCGTCGTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTTGCCGTTGCCGCTGTTGCGGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGATGATTATATGGAAGCTGGGAGTATAGTGTTTTTGTTTTCCATTGCCGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGGTGCAATGTGTTCACTAATGAGGTTAGCTCCCCAGAAAGCCACAATAGCTGAAAGTGGAGAGGTTGTGGATGTAAGAGATGTGAAATTGAAGAGTGTGTTAGGTGTGAAAGCTGGAGAAGTTATTCCGATTGATGGGATTGTTGTTGAAGGCAATTGTGAAGTTGATGAGAAAACTTTGAGTGGAGAAACTTTCCCTGTTACCAAACAAAAAGATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATAAGTGTTCAAACAACTGCTGTAGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCAAAAACTCAAACTTTCATTGATGAATGTGCCAAATATTACACTCCAGCTGTTGTTATCATCTCAGCTTGTCTAGCAGCCATTCCAGCTGCAATGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTTTTAGTGAGTGCATGTCCTTGTGCCCTAATCCTCTCCACCCCCGTCGCCGCATTTTGTGCTCTTACAAAGGCAGCCATGGCCGGAGTTTTGATCAAAGGCGGCAACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGTTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATTGAGAGCAAATCAAGCCACCCAATGGCAACTGCCCTTGTCAACTACGGAAAGCTGCATTCTATCGATCTTAAGCAGGAAAACGTAGAGGAATTTGAAAATTTTCTAGGAGAAGGTGTTCGTGGGAAGATAGATGGTAATGAAATTTACATTGGAAGCAAAAAAATTGCTGCCAGAGCTGGCTACGACATACCAGAATTGAACAACTTTGACGATGAAACAAGACAAGAGCAAACCCTTGGATATGTATTTTGTGGGGGGACAATAATTGGATCTTTCGGTCTATTGGATTCATGTCGTTCGGGAGTTAAAGAGGCAATCGAGGAGATCAAAAGTTTTGGAATTAAAACTGCTATGCTCACAGGAGATTGTAGGGCAGCTTCCATGCATGTCCAAGAACAGCTCGGGAGTACGCTTGACGTAATCCATTCAGAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGAATGATGGAGCAATTGCTATGGTTGGAGATGGCTTAAATGATACCCCAGCATTAGCTACCGCTGATATTGGCATGTCAATGGGTATTTCAGGTTCAGCATTGGCCACTGAAACTGGGAATGTGATTTTAATGTCAAATGACATGAGAAAGATTCCAAAAGCCATCAAACTAGCGAAGACATTCCACACAAAAGTAGTTCAAAATGTCATTTTGTCAATCGGTACGAAGACTGCCATCCTAGGCTTGGCATTTTCTGGACATCCCCTCATTTGGGCAGCCGTTCTTGCTGATGTCGGTACTTGTCTATTGGTCATCTTGAACAGCATGCTCCTTTTGAGAGGAACGGATCACAAACAAGGGAAGAAAAAATGTTGCAAATCTTCCAAACCATGCTTAACGAAACATGGACAAATGTGCGATGGTACTAGATCTTCTCATCATCACAGTCATCATCATGATCATGATCATCACCATAATCATCGATGCCATGTCGTCGATGATCAATCAACTAGTCAAGAGAATAATCATGTCCATAAGCATTGTTGTTGTGAGGAAAAGGATCACAAGATTCAACTTTCTCAAGATCACAATAGAGAAACTTGTGGAGTTCTGAACCAAGAGAAGAATATTAATCATGAATGTGGAGAGCATGAGTGTGAGGAAACTAATGTGCATCATAAAAAAGAAGATAAATTTCATCACAACTATTCAAATCAATGTGAGAAAACCCCACTTGAGAAAGAGATTAGGGGAAATTCTTCAAAGAGAGTGGGTAAATCAGATTGTAATTGCCACTCACATCATGTTACAATTGACATTCATGAAAGTAATGAGTGTGAGAGAGTAGAGCATAATTAG 2652 40.57 MSEEATEKMNKKVIKENKKLERSHFDVLGICCSSEIPLIENILKPLQGIKQITVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLKGKGIMKKKWPSPYAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANGAMCSLMRLAPQKATIAESGEVVDVRDVKLKSVLGVKAGEVIPIDGIVVEGNCEVDEKTLSGETFPVTKQKDSLVWAGTINLNGYISVQTTAVAEDCVVAKMAELVEEAQNNKSKTQTFIDECAKYYTPAVVIISACLAAIPAAMRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGNHLEVLAKIKVMAFDKTGTITRGEFVVTHFQALRDDISFHTLLQWVSSIESKSSHPMATALVNYGKLHSIDLKQENVEEFENFLGEGVRGKIDGNEIYIGSKKIAARAGYDIPELNNFDDETRQEQTLGYVFCGGTIIGSFGLLDSCRSGVKEAIEEIKSFGIKTAMLTGDCRAASMHVQEQLGSTLDVIHSELLPKEKANIIKEFKKNDGAIAMVGDGLNDTPALATADIGMSMGISGSALATETGNVILMSNDMRKIPKAIKLAKTFHTKVVQNVILSIGTKTAILGLAFSGHPLIWAAVLADVGTCLLVILNSMLLLRGTDHKQGKKKCCKSSKPCLTKHGQMCDGTRSSHHHSHHHDHDHHHNHRCHVVDDQSTSQENNHVHKHCCCEEKDHKIQLSQDHNRETCGVLNQEKNINHECGEHECEETNVHHKKEDKFHHNYSNQCEKTPLEKEIRGNSSKRVGKSDCNCHSHHVTIDIHESNECERVEHN* 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13082180 13087722 - Chy5G099290.1 Chy05g00883 227110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00883 883 Gene3D - 192 306 - -
Chy05g00883 883 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 15 759 - -
Chy05g00883 883 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
Chy05g00883 883 SUPERFAMILY HMA, heavy metal-associated domain 19 86 IPR036163 GO:0046872
Chy05g00883 883 Gene3D - 414 537 IPR023299 GO:0000166
Chy05g00883 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 397 IPR023298 -
Chy05g00883 883 SFLD Haloacid Dehalogenase 385 657 - -
Chy05g00883 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Chy05g00883 883 Gene3D - 395 657 IPR023214 -
Chy05g00883 883 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 15 759 - -
Chy05g00883 883 Pfam haloacid dehalogenase-like hydrolase 399 620 - -
Chy05g00883 883 SFLD p-type atpase 385 657 IPR044492 -
Chy05g00883 883 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 154 496 - -
Chy05g00883 883 Coils Coil 3 23 - -
Chy05g00883 883 Gene3D - 16 89 - -
Chy05g00883 883 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 177 682 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g00883 883 CDD P-type_ATPase_HM 105 708 - -
Chy05g00883 883 SUPERFAMILY HAD-like 402 707 IPR036412 -
Chy05g00883 883 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 154 709 IPR027256 GO:0006812|GO:0016021|GO:0019829
Chy05g00883 883 Pfam E1-E2 ATPase 206 381 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 529 540 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 606 625 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 551 561 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 630 642 - -
Chy05g00883 883 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Chy05g00883 883 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00883 Chy-Chr5:13082180 Chy08g00480 Chy-Chr8:11807453 1.37E-69 dispersed
Chy11g00225 Chy-Chr11:2099911 Chy05g00883 Chy-Chr5:13082180 9.44E-77 transposed
Chy02g02243 Chy-Chr2:26524277 Chy05g00883 Chy-Chr5:13082180 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00883 K01534 - csv:101203668 1634.39