Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00918 ATGCACTCCTTCGCCGCCCCCTGGTCCGGCGTTCCCGCCTCTACCAAACCCCTCTGCTGTTCCTGCAAGTCTTCCACCGCTGCTCTCTTCTGCCGACACGACACTGCCTTCCTCTGTCTCCGCTGTGATGCCCAAATCCACACCCTCTCCGACACGCGCCACCCACGTGTCTGGCTTTGCGAGGTCTGTGAGCAAGCTCCGGCCACCATCACCTGCAACGCCGACGCCGCCGCTCTCTGCCCTTCCTGCGATGCTGACATCCACTCTGTTAATCCCCTAGCTCGTCGTCATGACCGCTCCGCTATTCAACCCTTCTACGATTCGCCTCTGTCTTCCTCTGTCGCTTCTGTCTTCAAATTCCTTATCCCGACTCAACACCAACACGACGCTGTTCAACCCGATTTGAAATCGGAGGACATTTTCTTTTCCGATATGGATTCGTTGATTGATTTCGATTACCCGACTGCTGGTGATGGTGTTGTTCCTGAACAATCCAATCCAGGAACAGTGTCCACTACATCACCCACCGATTACTCTACTAGAAATTTCTCCGGGTTCCAGCTATGTAGTACTCGATCTAAACTCGATGCCATTAGCTACCCATCTCAGAATCTTAGCCATAGTGTTTCTTCATCTTCTTTAGACGTAGGAGTTGTGCCGGATAGGAACACGGCCTCCGACGCGTCGTTTTCGACGGGGCAGCTAGTGGAGAAGGCGGTTCAATTGCGGGGGATGGACCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAGAATCGGAAATTTGAAAAGACAATTCGGTATGCTTCGAGGAAAGCTTATGCTGAAATTCGGCCGAGGGTTAAAGGGAGGTTCGTTAAACGGAGTGAAACGAACTGTGAAATGGAGAGAATCTACGGCAGCGGCGGCGTGGGGTTCATGGTAGGCGAGGGGCAATACGGCGTTGTTCCGAGGCTTAGAGTTTGA 969 53.15 MHSFAAPWSGVPASTKPLCCSCKSSTAALFCRHDTAFLCLRCDAQIHTLSDTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPLSSSVASVFKFLIPTQHQHDAVQPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPEQSNPGTVSTTSPTDYSTRNFSGFQLCSTRSKLDAISYPSQNLSHSVSSSSLDVGVVPDRNTASDASFSTGQLVEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSETNCEMERIYGSGGVGFMVGEGQYGVVPRLRV* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13758625 13759703 - Chy5G099640.1 Chy05g00918 227145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00918 322 ProSiteProfiles CCT domain profile. 247 289 IPR010402 GO:0005515
Chy05g00918 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 16 318 - -
Chy05g00918 322 CDD Bbox1_BBX-like 59 102 - -
Chy05g00918 322 CDD Bbox1_BBX-like 18 59 - -
Chy05g00918 322 Pfam CCT motif 247 289 IPR010402 GO:0005515
Chy05g00918 322 SMART bboxneu5 55 102 IPR000315 GO:0008270
Chy05g00918 322 SMART bboxneu5 14 52 IPR000315 GO:0008270
Chy05g00918 322 ProSiteProfiles Zinc finger B-box type profile. 14 59 IPR000315 GO:0008270
Chy05g00918 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 318 IPR045281 GO:0009909
Chy05g00918 322 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Chy05g00918 322 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02191 Chy05g00918 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01067 Chy-Chr3:14104800 Chy05g00918 Chy-Chr5:13758625 1.20E-72 dispersed
Chy05g00918 Chy-Chr5:13758625 Chy07g00776 Chy-Chr7:8917093 1.33E-13 dispersed
Chy02g02191 Chy-Chr2:26080814 Chy05g00918 Chy-Chr5:13758625 9.02E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18021 PF00643 zf-B_box 1.60E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00918 - - csv:101217538 594.734