Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00992 ATGGTATCGGATGATTTTGGGATGATTTGGAAATGGGAATTGTTTATGGGGTTTGGACGGATTGAAATACAGGAATTAACTGTGTTTTGGTGGTTTTGGTTTATGGAGAGGGCTGATTTTGTTGTTTCTTATGTTGTAGTCTTGATATCATCTGAGAAATCAGGACGTCTTGGAATTGGGTTTTTGGAAATGATCTATCTTTTAGGATGCTTAAAGAAAATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGTGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTTCATGGAAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCCGAAGGACTTAAATCAATTGGCCGATCGCTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCGGAGGATCTTAAAGAGTCAAAGAAGCAAATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAGTATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTCAAACTGTCTTGGAATTGATAAAAAACTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTCTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCCTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTATTTCATCGTTGACCTGGTGTCTGTGCTGCCACTGCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAGAGGTTCAGATGTATACGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAATGTTACCGTTGGCTTCAGAGTTGAAAAGGACAACAGGTGTTTTTGCAGAAACTGCTTGGGCAGGTGCCGCGTATTATTTGCTATTATATATGCTTGCAAGCCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGGAATGATACTTGTTGGCAGAAGTTTTGTAATGCCCCTTGCAAGAAAGATTTCTTGTATTGTGGTAACCAAAACATGGAAGGTTATGCAAGTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCAAACCTGCTGATGAAAATAAGCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCTTCTGGTATTGCTGCGTCCAAGAATTTCATCGGAAAATATTGTTACTGTCTGTGGTGGGGACTACAAAATTTAAGGAAAATGTACATTAAACTTGATGCGATAGATAGCTATACCTTTGTTTATCTTCTTGTGCATTATGATTGGACCAAGCAATGGAGGACCTGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGCTGCAGCAGAAGAGGGATCTCAAACTGCCACAAGTGGAGGCTCTTATAGCATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGCGTTCAGCGATATCGAAATGCAAAGAGTGCTCAGGAATTGATAAAATTGCAGAAACCTCCGGAGCCAGATTTTAGTGCTGATGATGCAGATTGA 1734 40.95 MVSDDFGMIWKWELFMGFGRIEIQELTVFWWFWFMERADFVVSYVVVLISSEKSGRLGIGFLEMIYLLGCLKKMFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKQIFDPQDKLLLFLNKLFVISCILAVSVDPLFFYVPVINQSSNCLGIDKKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDLVSVLPLPQIVVWRFLQRSRGSDVYVTKQALLLIVFLQYIPRFLRMLPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKFCNAPCKKDFLYCGNQNMEGYASWNQTGVDGLKSSCKPADENKQFDFGIFQQALSSGIAASKNFIGKYCYCLWWGLQNLRKMYIKLDAIDSYTFVYLLVHYDWTKQWRTWAACFIQAAWRRYSKRKSMELRQKEEAAAEEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14586237 14596795 + Chy5G100380.1 Chy05g00992 227219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00992 577 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 481 574 - -
Chy05g00992 577 Gene3D - 183 456 - -
Chy05g00992 577 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 85 460 - -
Chy05g00992 577 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 85 460 - -
Chy05g00992 577 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 481 574 - -
Chy05g00992 577 SUPERFAMILY Voltage-gated potassium channels 174 456 - -
Chy05g00992 577 ProSiteProfiles IQ motif profile. 486 515 IPR000048 GO:0005515
Chy05g00992 577 Pfam Ion transport protein 182 457 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01471 Chy-Chr4:21377399 Chy05g00992 Chy-Chr5:14586237 3.44E-104 dispersed
Chy04g01499 Chy-Chr4:21627496 Chy05g00992 Chy-Chr5:14586237 0 dispersed
Chy05g00992 Chy-Chr5:14586237 Chy06g01240 Chy-Chr6:11326830 9.48E-102 dispersed
Chy05g00992 Chy-Chr5:14586237 Chy09g01430 Chy-Chr9:15884045 5.40E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00992 K05391 - csv:101219180 755.362