Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01035 ATGGAAGAGTTTTACAGGCTTAACAACCCTGTTATAACCTCATATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGTACAAGCTGTGGAGAGATTCATGAAGCTTTAATGGTGGATGATGATATGCTTCAGCTTGAGGCTGAGGTTACAACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAACTTGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTTCTAGATCCTCTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTCATGGAATCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAATTTGTGTAAAGGATCGTTTACCATGATGTCGGATTCTCGCTCCGCCATGAATGACGAAGTATCCGGGACTCCAGAGGAAGAACCAAGCAGCTATGAGGAGGTGGAAATGCCGAGGAATCACGAGCCATTCTGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGCTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAAGAGAAGCTACCAAAAGATGCAAGAATGGCTTTACTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTATCTGTTACTACTGGTCTAGACCAAAAGCAAATTAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCACCCGAAGACATGCGATTTGTGCTCATGGATGGAGTCGGGGCCGGGGAATACATGAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAAGCCATGTAATTTGA 966 40.99 MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTMMSDSRSAMNDEVSGTPEEEPSSYEEVEMPRNHEPFCTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVTTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGVGAGEYMKGSNFYDNGETGSHVI* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14963722 14966774 + Chy5G100810.1 Chy05g01035 227262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01035 321 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Chy05g01035 321 Pfam ELK domain 204 225 IPR005539 GO:0003677
Chy05g01035 321 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Chy05g01035 321 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Chy05g01035 321 CDD homeodomain 236 287 IPR001356 GO:0003677
Chy05g01035 321 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Chy05g01035 321 SMART HOX_1 226 291 IPR001356 GO:0003677
Chy05g01035 321 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Chy05g01035 321 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Chy05g01035 321 MobiDBLite consensus disorder prediction 168 190 - -
Chy05g01035 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Chy05g01035 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Chy05g01035 321 SMART ELK_2 204 225 IPR005539 GO:0003677
Chy05g01035 321 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Chy05g01035 321 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Chy05g01035 321 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Chy05g01035 321 Gene3D - 222 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01035 Chy-Chr5:14963722 Chy07g00220 Chy-Chr7:1794759 7.02E-73 dispersed
Chy10g00888 Chy-Chr10:14657309 Chy05g01035 Chy-Chr5:14963722 7.66E-07 dispersed
Chy05g01035 Chy-Chr5:14963722 Chy03g01721 Chy-Chr3:18711428 1.06E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18025 PF03791 KNOX2 3.70E-21 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01035 - - csv:101203403 618.616