Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01039 ATGTCGGAGCTTGGAGAACTTTACCACAAGATCTCCACTCTTGAGAGCCTCAAACCCTCTAAACATGTCAACTCCCTCTTCTCTCAACTTGTACTCCTCATTTGCACCCCTTCTTCCTCGTCCATCGACGTCTCCACGCTCTGCTCCACCATCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCGAGGCCGAGTCCCTTCTCGAGCATCACTACTCCACCATTTTATCTTCCCACCAAAACCCTCTCGACCATCTCTCCCTCTTCCCTTATTACTCCAACTACCTCAAACTCACTCACTTAGAATTCTCCATTTTGAACCACCACGCCCCCCACAGTACTACTACGCCTCCCTCTAAAGTGGCATTTGTTGGCTCCGGTGCACTTCCCTTCTCGTCTATCATCATGGCCTTGAAGTACTTCCCAAAAACCGAGTTTCACAACTTCGACCTCGACCCGTCTGCCAATGCGAAAGCATCGATGCTGGTAGCAGGCGACGTGGAGCTGTCGAGGCGGATGGTGTTCCACACGACCGACATCATGGACGTCGGGTCGGAAGAGTTGAGGGAGTTCGAGGTGGTGTTTCTGGCGGCGTTGGTGGGGATGGAGAGAGAAGAGAAGGGGAAGGTGATCGAGCATTTGAGGAAGAATATGAGTGGTGGGGCGTTGTTGATGTTGAGGAGCGCATATGGTGCACGAGCGTTTGTTTATCCGGTGGTGGAAGCTTGTGATCTTCGGGGGTTCGAGATTCTTACG 759 52.31 MSELGELYHKISTLESLKPSKHVNSLFSQLVLLICTPSSSSIDVSTLCSTIQTMRSHLIKLCGEAESLLEHHYSTILSSHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHAPHSTTTPPSKVAFVGSGALPFSSIIMALKYFPKTEFHNFDLDPSANAKASMLVAGDVELSRRMVFHTTDIMDVGSEELREFEVVFLAALVGMEREEKGKVIEHLRKNMSGGALLMLRSAYGARAFVYPVVEACDLRGFEILT 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14996651 15001120 - Chy5G100850.1 Chy05g01039 227266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01039 253 PANTHER NICOTIANAMINE SYNTHASE 3 3 252 IPR004298 GO:0030410|GO:0030418
Chy05g01039 253 Gene3D Vaccinia Virus protein VP39 1 253 IPR029063 -
Chy05g01039 253 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 253 IPR004298 GO:0030410|GO:0030418
Chy05g01039 253 Pfam Nicotianamine synthase protein 3 252 IPR004298 GO:0030410|GO:0030418
Chy05g01039 253 PANTHER SYNTHASE, PUTATIVE-RELATED 3 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01039 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101219339 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02214 Chy-Chr2:26256628 Chy05g01039 Chy-Chr5:14996651 8.49E-83 dispersed
Chy05g01039 Chy-Chr5:14996651 Chy08g01076 Chy-Chr8:17916883 9.66E-83 dispersed
Chy05g01038 Chy-Chr5:14979736 Chy05g01039 Chy-Chr5:14996651 1.39E-89 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01038 CCT 7 281 Nicotianamine Synthase Gene Family AT1G09240 58.0 2.2e-87 319.3
Chy05g01039 . 6 253 Nicotianamine Synthase Gene Family AT1G09240 58.6 1.7e-76 283.1
Chy02g02214 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 55.6 1.4e-73 273.5
Chy08g01076 CCT 1 233 Nicotianamine Synthase Gene Family AT1G09240 55.1 1.4e-70 263.5
Chy05g01038 CCT 7 332 Nicotianamine Synthase Gene Family AT1G56430 52.6 2.3e-92 335.9
Chy02g02214 . 18 285 Nicotianamine Synthase Gene Family AT1G56430 54.4 1.2e-77 287.0
Chy05g01039 . 1 253 Nicotianamine Synthase Gene Family AT1G56430 57.1 1.7e-76 283.1
Chy08g01076 CCT 3 233 Nicotianamine Synthase Gene Family AT1G56430 56.9 3.3e-75 278.9
Chy05g01038 CCT 7 281 Nicotianamine Synthase Gene Family AT5G04950 58.1 1.2e-88 323.6
Chy05g01039 . 1 253 Nicotianamine Synthase Gene Family AT5G04950 55.5 3.5e-77 285.4
Chy08g01076 CCT 1 233 Nicotianamine Synthase Gene Family AT5G04950 53.8 1.7e-71 266.5
Chy02g02214 . 18 282 Nicotianamine Synthase Gene Family AT5G04950 50.6 2.9e-71 265.8
Chy05g01038 CCT 10 281 Nicotianamine Synthase Gene Family AT5G56080 57.9 3.4e-88 322.0
Chy05g01039 . 1 253 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.7e-76 283.1
Chy02g02214 . 18 282 Nicotianamine Synthase Gene Family AT5G56080 50.7 1.2e-69 260.4
Chy08g01076 CCT 1 233 Nicotianamine Synthase Gene Family AT5G56080 53.2 7.8e-69 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g01039 Chy_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0