Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01060 ATGGCGTCGAGGAACCGCACTTTGCTTTTTAAGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCCCCTGCTTCTGCATCGCCATCGACTAGCTCAGCTGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCCTCGTTGTTGCATCCGAATCGATCGTATGCTCCATTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCGGCTTGGGTTGATGTTTCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGATGGAGTTGGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGTGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACGCAGGACATAACTAGTTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTTTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGGTCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAACAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATTTAAATGGAAATCGATCGAGAATGGAGGACGACGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGTAGAAAGAGAGAGAGAGATCAAACAAGTTGTAGAATCCGTGAACGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACAATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACGACCGTTGATGAGGGCCTTAAGCAATTGCAGAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGTGCATCCGTGCTCATTATCATGTGCTTCGTCATAGACCTTTACACAACAAAGTTCATGGCTTTTCCATGCCAATCCGAGATTCTTGAGCACATAGGACTCATTCTTCTGATCAGCGTTTTCAGACAGGGAAGGGGAGGAATTTAG 1065 44.23 MASRNRTLLFKKYRDALRSVRVPTSSSPASASPSTSSAAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDGKEDQRLIESLTQDITSLIKKSEKGLKRLFVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTVEREREIKQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVIDLYTTKFMAFPCQSEILEHIGLILLISVFRQGRGGI* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15128760 15132516 - Chy5G101060.1 Chy05g01060 227287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01060 354 CDD SNARE_syntaxin16 238 294 - -
Chy05g01060 354 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 318 - -
Chy05g01060 354 SMART tSNARE_6 228 295 IPR000727 -
Chy05g01060 354 SMART SynN_4 73 188 IPR006011 GO:0016020
Chy05g01060 354 PANTHER SYNTAXIN 1 318 IPR045242 -
Chy05g01060 354 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Chy05g01060 354 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy05g01060 354 Pfam SNARE domain 269 318 IPR000727 -
Chy05g01060 354 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Chy05g01060 354 Gene3D - 79 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01727 Chy-Chr1:23040642 Chy05g01060 Chy-Chr5:15128760 5.12E-139 dispersed
Chy05g01060 Chy-Chr5:15128760 Chy06g02160 Chy-Chr6:25892952 2.86E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01060 K08489 - csv:101207998 569.696