Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy05g01064 | ATGGGGCATTTCTCCACCATGTTCATTGGGCTCGCGAGGTCATTTTCGTTCAAGAAAGGTAGAAATTCCGGAAGTCTCGATGATGGGGGAGGGCGAGAATCTGCAAAAGCCATGCTAAAGGATGCCAAAAGGAAAGACTCGATATTATGCACCTCCGGTGTTCTTAATTCAGAAGGTTCGGATACTTTTGCTTCGGTGTTTTCGAAGAAAGGCGAAAAAGGAGTAAACCAAGACTGCTGCATTGTATGGGAGGAATTTGGTTGCCAAGAAGACATGATATTCTGTGGGATTTTCGATGGGCACGGACCATGGGGTCATTTTGTTGCAAAGACGGTAAGAGAATCATTGCCACCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAACGATATGATATATGGAGGCATTCTTATTTAAGGACTTGTGCTGCAATTGATCGCGAACTTGAGCAGCACCGTAAAATCGATACATATTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTAGTCGTTTTGGCCAACGTAGGTGATTCCCGAGCAGTTTTAGCTACTACTTCAGACGATGGAAGTGTAGTAGCGGTTCAGCTCACAGTTGATTTCAAACCAAACCTACCTCAGGAGACCGAGCGAATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAGTGATGAGCCAGGAGTTCACAGAGTCTGGCTTCCAAACGAGGAATCACCGGGATTGGCGATGTCGAGAGCCTTTGGTGATTATTGTATTAAAGATTTTGGACTCATTTCTGTTCCAGAAGTGACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTAGAAATCGTATCGTCAACACCGGACAGAGCAAAAGCGTCAAAACGTCTGGTCGAGTGTGCGGTTCGGGCATGGAAGCGGAAGAGACGAGGCATTGCAATGGATGATATATCAGCTATTTGCCTCTTCTTCCACTCCTCATCAGAGCAAGAACATCACCTTGTCTCCCCACTATAG | 1104 | 45.38 | MGHFSTMFIGLARSFSFKKGRNSGSLDDGGGRESAKAMLKDAKRKDSILCTSGVLNSEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDSEKKHQRYDIWRHSYLRTCAAIDRELEQHRKIDTYYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVAVQLTVDFKPNLPQETERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRAKASKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQEHHLVSPL* | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 15162792 | 15164541 | - | Chy5G101100.1 | Chy05g01064 | 227291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy05g01064 | 367 | ProSiteProfiles | PPM-type phosphatase domain profile. | 63 | 353 | IPR001932 | - | |
| Chy05g01064 | 367 | Pfam | Protein phosphatase 2C | 87 | 331 | IPR001932 | - | |
| Chy05g01064 | 367 | Gene3D | - | 50 | 356 | IPR036457 | - | |
| Chy05g01064 | 367 | CDD | PP2Cc | 63 | 353 | IPR001932 | - | |
| Chy05g01064 | 367 | PANTHER | CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C | 1 | 362 | - | - | |
| Chy05g01064 | 367 | SMART | PP2C_4 | 52 | 351 | IPR001932 | - | |
| Chy05g01064 | 367 | SUPERFAMILY | PP2C-like | 55 | 354 | IPR036457 | - | |
| Chy05g01064 | 367 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 362 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy05g01064 | Chy-Chr5:15162792 | Chy02g01896 | Chy-Chr2:21869986 | 6.45E-29 | dispersed | |
| Chy01g00360 | Chy-Chr1:2603736 | Chy05g01064 | Chy-Chr5:15162792 | 9.21E-106 | transposed | |
| Chy03g00380 | Chy-Chr3:5269049 | Chy05g01064 | Chy-Chr5:15162792 | 1.65E-109 | transposed | |
| Chy05g00688 | Chy-Chr5:8866348 | Chy05g01064 | Chy-Chr5:15162792 | 1.05E-102 | transposed | |
| Chy06g01963 | Chy-Chr6:23624897 | Chy05g01064 | Chy-Chr5:15162792 | 8.33E-94 | transposed | |
| Chy07g00230 | Chy-Chr7:1872076 | Chy05g01064 | Chy-Chr5:15162792 | 2.92E-74 | transposed | |
| Chy08g00602 | Chy-Chr8:13832767 | Chy05g01064 | Chy-Chr5:15162792 | 1.16E-95 | transposed | |
| Chy11g01535 | Chy-Chr11:21916084 | Chy05g01064 | Chy-Chr5:15162792 | 1.06E-130 | transposed | |
| Chy05g01064 | Chy-Chr5:15162792 | Chy08g01063 | Chy-Chr8:17753092 | 8.75E-146 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy05g01064 | - | - | csv:101208725 | 746.117 |