Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01131 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTATGTTACAATGGAAGCAAAGATCTTTACTCTTTACTTGGAGGAGGAATTTGGGCTAATGGAAGCTTTGAATATCCAGAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCATCTTCCTCTGTTTTTGTTCCTAACCCTTCTCCTGAAGCTGCTGATTCCAGAAGTGGGTTGCTGAAGCCGCCATTAGAGGCTGAATCAATTACTCCGCACCCAATTCGTCCAAGGAAACGAAGACCTAAATCACGCAAGAACAAAGAGGAAATTGAAAATCAAAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAATATCTCTCTGTTCTTCGTTCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCGATTAATTTTGTGAAGGAGTTAGAACAACAAGTTCAAGTTCTATCCACAGTAGAAACAAAAGGGAAGATTAATAATTCAGCTGAAGGGTGTTGTAATTCAAATTCAAATTCAAATTCAAAAATCCCTTTCACAGAGTTTTTCAGTTTCCCTCAATTCAAAGCAATGGAAGGTTGTTCTTTAGTGAGTGAAAATGAGACTCAATGTTCTTCCACAGTGGCTGATATTGAAGTAACAATGGTAGAAAATCATGCAAATTTGAAAATAAGATCAAAGAGAAGACCAAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATTTCAACTATCAACCAAATTGTTCTTTATTGTCTCAGTGTCAAGGTCGAAGATGATTGCAAGCTGAGTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA 954 37.63 MALEAVVFSQDPLCYNGSKDLYSLLGGGIWANGSFEYPEIPHDFPENQTENFPFEDWNSSSSVFVPNPSPEAADSRSGLLKPPLEAESITPHPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTVETKGKINNSAEGCCNSNSNSNSKIPFTEFFSFPQFKAMEGCSLVSENETQCSSTVADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLSSVDEIASALHQLLSRIEEDSLMN* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15809475 15810956 + Chy5G101770.1 Chy05g01131 227358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01131 317 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 317 - -
Chy05g01131 317 PANTHER MAX DIMERIZATION, MAD 1 317 - -
Chy05g01131 317 SMART finulus 118 169 IPR011598 GO:0046983
Chy05g01131 317 MobiDBLite consensus disorder prediction 63 110 - -
Chy05g01131 317 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Chy05g01131 317 Gene3D - 95 177 IPR036638 GO:0046983
Chy05g01131 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Chy05g01131 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01342 Chy-Chr3:16392434 Chy05g01131 Chy-Chr5:15809475 2.71E-80 dispersed
Chy04g00104 Chy-Chr4:972765 Chy05g01131 Chy-Chr5:15809475 1.09E-59 dispersed
Chy05g01131 Chy-Chr5:15809475 Chy06g00371 Chy-Chr6:2484401 4.37E-52 dispersed
Chy05g01131 Chy-Chr5:15809475 Chy06g02143 Chy-Chr6:25749137 1.02E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18030 PF00010 HLH 7.80E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01131 - - csv:101212782 575.089