Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01158 ATGATGAAGCTGCAAACATATGCGGGGATTAGTTTTATTGCAACCATAATGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTCTACCCAGCATTGGTCTATTTATCGACCTCCAAGATAAATCTAGTACTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGGTAACAAAAAAAATATTTCTGGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTTCGGCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACGGCTCTGTTGTTGATCAAAGCTCTCCATTGGCTGGCTCAGAAGAGAGTTGAATACATGGAAACCACTCCATCGGTGCCATTGTTGTCTCATATCCGGATTGTTTCTTTCTTAGGCTTCCTCTTTGTTCTCGATAGTCTGTTTTTTTATAATTCGATAGATTCTCTGATACAGACAAGGAAGGCATCGGTTTCTCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCTGTGTCAACATTTGTGAAATATATCTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAACCAGTCTATACATTTTACTTGGAACTTATTCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTTTATGAGATCTTTAGGAATTTCAGGATTCGAATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAACGATCGTTTTCCAGATGCAACGCCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGTCTCCGATCTTGGTTGGAGCGACAACATACTTGTCCCACTTGTAGAGCCCTTGTTGTACCACCCGAAGGTTCAAGTACAACAAGCGGTCATCATGGTGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCTGCACAGGGTACAAGTGGCACGGGCGTTACTAATGATAATTTAAGTCATCATCAAGCTAGAGTCCGAGCTGCCGCCGCCGCCGCTTCAATATATGAGAAATCGTATGTTTATCCTTGTGCGAGCACATTAGTATGGTCTCTTGGATATGCAGTAGTTCCTCAAGTTGAAAGACCTTTGTTTGACTCTAACAATACAGAAACAAATGGAGAGCAATCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGTGGCCCTTCAAACCTGTCCTTCAGTCAATTTCCCCAAAATATCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATATAGAGGAATTGGGCAGTAGTTTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAAATTTCTTCAACAACAGATTGAGTTCCTTCAGAATCAACTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGAAGATAGCGAGGCAGATAAAAAAGGGAAAAGTTTAGCTATCTCACCATCATCATTGTCTTCATCAGATTCTCATTCACCTGGAGAAACCGAAAGGGTGGTGAAAATATGTCGCCGACTTCTACATCGATTAAGATTGATCTTACATGATGAACATATCGCTCTCAAGTTTCGTCGTCTCCTCAGGTACTCTCCATCTTCTTCTATCTCTTTCTACAACTTATTGTTGAACTTTGTTAGGCTTTCGAGAGAGACTGAGAGACGAAATGGAGCCGAAAGTGCCTATTGTCTTGTGTTTTTTGTTGCGATCATGAAACAAGATTCAAATATGGAAGCAGATTCTGCTTTTCCTGAATGTGAGGAGAAGGAAGTACGTATGTCTGATGTAGAGAAAATGGAGGGGAATGTAGAAGAGTTCTCGACTGAACATGAAAGCAAGGAGAAAGAAGCAGTATCTTCGGCAGTTCAAGAAGATAGCAAAATGAAAGAAGGCTCCCCTACAAAACAAGTAGATGACATGAAAGAAGCTGTAACTGAAGTTGGGAGCGCCACTGAAGCTGGGAAGTCTGCTGAAAAGTCCGTCAAAGAAGGGTTGCGTAAAAAGAGAATTGTAAAAGTTCTGAAAGTAAAAAAGAAAATTATAAAGAAATCCCCAGCTAACAGTGTGTTGAAAAAAAAAGAAGTACAGGTTGAACAGGAAGATGAAAAAAAGGAAAAAGAGGTTCCTGTAGCTCAAGAAGTGGAAGAAAGTCCTTTGACTCAGAACCCCACTGAAAGTTCCAATCCAGAGTCAAAGAAGAATAATAATAATGAAGTTTTAAAGGTGAAAAGGAAAATTGTAAAGAAATCTCCAGCCAGTAGTCAAAAGAAGACTAATAAGCTTCAGAATAGTCCTAAGGTGCAAGTCAGAAAGAAAGTGGAGAATAGTAAGAGTTCGTTGCTGGAGAATGGGGAAGGAAGTGAAAAAAAGGTAGAAGATACTGAGGGGCCTAACCAAAAGGAAAATGTTAAGAAAAGTGTATCAAAAGAGGAGCATATAGAAAAGGGAGAAGAGACTTCTGCTAGTAAAAAGCAAAATTCTGAGTCTAAAAATAGCATCAAAGAAGGGAAGATCATAGAGAAGGCTGGTTCTTCAAATAAAAGCATAAAGAATCAGAAAAAGAAAGAAAAGGTTAGAGAGCAAAGGAGTCGAAGGGAAGATAAAAATAAAGAAAATCTTGGTGGACTGATTTTCATGTGCAGTGCAAAAACGAAGCCAGATTGTTTTCACTACAACGTAATGGGTGTTTCTGCTGGCAAAATGGATGTTGTCTTGGCAATTAAGCCTGGGTTGAAGCTCTTTCTCTACGATTTTGATCTCAAGCTTCTGTATGGGATTTATAAAGCATCCTCTACCGGTGGCATGAAACTTGAGCCAAAGGCTTTTAATGGGGCTTTCCCTGCTCAGGTGCGGTTCAATATTTACAAGGATTGTTTTCCACTACCTGAGAATGTTTTCAAGGAGGCTATCCAAGAGAACTATTATGAGAAGCACAAGTTCAAAGCCGAGCTCACTGTTAAACAGGTTAGGAAGCTCTCAGATCTTTTCCGACCAGTTGCACTCCATTCGAGTGCTGCTCCTGTCTTGTCCCATGTGGAGGTACCAATTAGGGATAGAAATGTTCATGGGAAAGCTAAAGACATTCGGGTTAGGAACTCTAAGTCCAAGGATGATGCCAGGAAATACCATTTGTCATCTCATGGAAGGGATCGACAGAGAGAAGAGGCACCTAGACGTAGAGAGGAGGTTCCTCGTGATTTATACCTAAGCGAAAGGGACTATCGAACATATGGGCTCCGGGCAGAGAGAAGAAATTTAGACCCTGTATCTCGATCTTCTTTAGAAACATACCGCAGGGATCATGATAGGGACTATCAACTGAAACATCTAGAGCCTAGATACAGGGATGATGTCTCGACACACGCACAGAGAGAAATAGTCCGTTCGGATCAAGTATACTTTAATGGGAAAGATTATCCAGTTTACAGTATTGATTCTAGACATCAAATATCACCTCTAAGACCAATATCTGCTAGTGGTACAGAACACAATGCTTATGATTCGATTTACAGTCGTCAATATGGCCTTTCTTCTATTGATCCATATCTGCTTTCATCAAGGAGGGAGGAAGCAGCCCCTCCAACTTATTCAAGAAGTTATTTAGCTGATACTGAACCCATGAGACATGCTGCTGGTGCTCTATCGCATTACAATCAAGTGCACTACAAAGATGTGGAAAAAGATACAATGCCAGTTTCATCGCGGTACTCATTCGCTGGTCCATCGTTCTCTTATCGCTAA 3903 40.69 MMKLQTYAGISFIATIMVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQVTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIDSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTTSGHHGGVQSDANQQGTGTTSSSAQGTSGTGVTNDNLSHHQARVRAAAAAASIYEKSYVYPCASTLVWSLGYAVVPQVERPLFDSNNTETNGEQSPNGHPQYFSFPGGPSNLSFSQFPQNIFVPFQPREGTGNNIEELGSSLNVSGSQLEAQEKFLQQQIEFLQNQLQLLRKPKVEESSREDSEADKKGKSLAISPSSLSSSDSHSPGETERVVKICRRLLHRLRLILHDEHIALKFRRLLRYSPSSSISFYNLLLNFVRLSRETERRNGAESAYCLVFFVAIMKQDSNMEADSAFPECEEKEVRMSDVEKMEGNVEEFSTEHESKEKEAVSSAVQEDSKMKEGSPTKQVDDMKEAVTEVGSATEAGKSAEKSVKEGLRKKRIVKVLKVKKKIIKKSPANSVLKKKEVQVEQEDEKKEKEVPVAQEVEESPLTQNPTESSNPESKKNNNNEVLKVKRKIVKKSPASSQKKTNKLQNSPKVQVRKKVENSKSSLLENGEGSEKKVEDTEGPNQKENVKKSVSKEEHIEKGEETSASKKQNSESKNSIKEGKIIEKAGSSNKSIKNQKKKEKVREQRSRREDKNKENLGGLIFMCSAKTKPDCFHYNVMGVSAGKMDVVLAIKPGLKLFLYDFDLKLLYGIYKASSTGGMKLEPKAFNGAFPAQVRFNIYKDCFPLPENVFKEAIQENYYEKHKFKAELTVKQVRKLSDLFRPVALHSSAAPVLSHVEVPIRDRNVHGKAKDIRVRNSKSKDDARKYHLSSHGRDRQREEAPRRREEVPRDLYLSERDYRTYGLRAERRNLDPVSRSSLETYRRDHDRDYQLKHLEPRYRDDVSTHAQREIVRSDQVYFNGKDYPVYSIDSRHQISPLRPISASGTEHNAYDSIYSRQYGLSSIDPYLLSSRREEAAPPTYSRSYLADTEPMRHAAGALSHYNQVHYKDVEKDTMPVSSRYSFAGPSFSYR* 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16049506 16063649 - Chy5G102040.1 Chy05g01158 227385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01158 1300 MobiDBLite consensus disorder prediction 739 922 - -
Chy05g01158 1300 PANTHER - 1 455 - -
Chy05g01158 1300 ProSiteProfiles DCD domain profile. 925 1052 IPR013989 -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 425 450 - -
Chy05g01158 1300 SUPERFAMILY RING/U-box 272 336 - -
Chy05g01158 1300 SMART ring_2 292 329 IPR001841 -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 340 376 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 741 766 - -
Chy05g01158 1300 CDD RING-H2_synoviolin 289 330 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 1077 1118 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 514 549 - -
Chy05g01158 1300 Pfam Development and cell death domain 928 1050 IPR013989 -
Chy05g01158 1300 Coils Coil 487 507 - -
Chy05g01158 1300 Coils Coil 650 670 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 514 530 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 806 823 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 659 716 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 534 548 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 824 922 - -
Chy05g01158 1300 PANTHER RING ZINC FINGER PROTEIN 1 455 - -
Chy05g01158 1300 SMART dcd 925 1052 IPR013989 -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 659 696 - -
Chy05g01158 1300 MobiDBLite consensus disorder prediction 769 789 - -
Chy05g01158 1300 Pfam Ring finger domain 291 330 IPR001841 -
Chy05g01158 1300 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Chy05g01158 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Chy05g01158 1300 Coils Coil 905 925 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00435 Chy-Chr5:4716096 Chy05g01158 Chy-Chr5:16049506 2.74E-25 dispersed
Chy05g01158 Chy-Chr5:16049506 Chy07g01552 Chy-Chr7:19759754 2.22E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01158 K10601 - csv:116402060 1146.72