Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01160 ATGCTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGATTTGTTGAGGAAGAAAAACTGGGCATGGCGATTCGATCTGTGGCCATTTGCCATTCTTTATGCCGCCTGGCTTGCCGTTGTTGTTCCCAGTATAGACTTTGGAGATGCTTTTATTGTTTTAGGTGGACTTGCGGCTCTTCATGTTCTGGTCTTGCTATTCACTGCTTGGTCTGTTGATTTCAAATGTTTTGTTCAGTACAGTCAGGTTAATGATATTTACTTTGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAAATTGTTTCGCTTCATTTTCGTAAGCTTCTGGCGGGTTCTACGTCTGCAGTTGATCTCGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAAAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACGTTTGGTTATTATCTAAAGAATACTGGATACGGCTCTGAACCTAAAGTTGTAGCTGCTGTGGAAAAATGGGGGCGCAATATATTCGAGTATCCACAACCTACATTTCAGAAATTAATGAAGGAGCAGTGTATGGAACCATTTTTTGTGTTTCAGGTTTTTTGTGTGGGACTATGGTGTTTGGATGAGTATTGGTATTACAGCCTGTTTACTCTGTTTATGCTGTTCATGTTTGAGTCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTGAGACGTGTCAGAGTGGATACTCAGACCTTAATGGTGCATCGTTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCCATAGGGCGTGATTCTGGTCAGAGTGGTGATGATAAATCTGTACCTGCCGATATGCTAATCTTGGCTGGAAGTGCTATTGCTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAATAACTGGTAGAGGAATTGATGAGAAGTTATCAGCTAAGAGAGACAAAAGTCATGTGTTATTTGGTGGGACCAAAATACTACAGCATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGCGAACTGGATTTGAAACAAGTCAAGGGAAACTAATGCGCACAATTTTGTTTTCTACGGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATTATGTTCTTAGTTGTATTTGCAGTTATAGCTGCTGGTTACGTACTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTCAGTTGCTCACTTATAATCACTTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCAGTTAATACATCGTTAATTGCTCTAGCACGTCGTGGAATATTTTGTACAGAGCCTTTCCGAATACCATTTGCTGGGAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACATTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGTTTGAGTGATAAGGAGGAATTGGAAACTGACATGACTAGTGTGTCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCTCTCAAGGGAGTCGATTGGATTTACAAATCTGATGAGAAAGCCATTCCCAGAAAGGGAAGTGGCAACGCTGTCCAGATCGTTCAGAGGCACCACTTTGCTTCATATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATGTACCTTCATTTTATGTTGAGACTTATAAGAAATATACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCACGAGGCCTGGATAGAGACTTGGTGGAGAGTGACCTGACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGATTCAGCTACAATATTATCTGAGCTTAAAGGATCATCCCATGACTTGGTCATGATTACTGGTGACCAAGCTTTAACAGCATGCCACGTGGCTAGCCAAGTTCATATTACCTCAAAGCAAATTTTAATTCTCAATTCAATGAAGGGAACTGAGGAATATAAATGGCTTTCCCCAGATGAGTCACAGACAGTTCCCTACAGTGAGAAAGAGGTGGGAACTTTATCAGAGACATATGATCTTTGTATTGGAGGTGACTGCATTGCGATGCTACAACGCACCTCCACTGTGCTGGATGTTATTCCATATGTTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATTTTGACCACTTTCAAAACAGTAGGAAGAATGACGTTAATGTGTGGGGATGGTACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTCCTAAACGCAGTCCCTCCTCAAAGTGGTAACTCTTCTTCAGAAGCATCTAAAGATGAGGCTGTACGGTCTGGAAAGTCAAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTGTTAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTGGTGCAAAACTGGATTCTGCTGCTGAGCAAGCTAGCAACCGTGCACGGACACCTGCAGAGATGCAAAGACAGAAGCTAAAGAAACTTATGGATGAGTTAAACGAAGAGGGCGATGGGCGCTCTGCCCCTATAGTGAAGCTTGGAGATGCATCCATGGCATCACCATTCACTGCAAAGCATGCTTCTGTTGCCCCTACTACTGACATTATTCGCCAAGGTCGAAGTACCCTAGTGACAACACTGCAAATGTTTAAAATTCTTGGTCTCAACTGCCTCGCTACTGCCTACGTACTGAGTGTTATGTATTTGGATGGTGTAAAGCTCGGTGATATTCAAGCCACTATCAGTGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACATGCGCGGCCCCTTCCAACACTCTCAGCTGAACGCCCCCATCCACATGTCTTTTGCTCTTATGTTCTCCTTTCTTTGTTGGGCCAATTTGCAATCCACTTATGTTTCTTGATTTCTTCAGTGAAAGAAGCTGAAAAGCATATGCCTGATGAATGTATAGAGCCTGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCCGAAAACAAGCCGTTCTTATACGCCCTCTTGGCTGCAGTCGGTTTTTTCACTGTTATTACCTCCGATTTGTTTAGAGATCTCAATGACTGGCTGAAACTTGTTCCATTGCCTGCGGGAATGAGGGATAAGCTTCTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACGCTTGGGAAAGACTGTTGAGATTTATGTTCCCAGGTAAAATTCCGGCATGGCGGAAGCGACAACGACTGGTGGCTGCTAATCTGGAGAAGAAGAAACAGGTCTGA 3576 43.29 MLRFHVGGKVVERVDLLRKKNWAWRFDLWPFAILYAAWLAVVVPSIDFGDAFIVLGGLAALHVLVLLFTAWSVDFKCFVQYSQVNDIYFADTCKIVPAKFSGSKEIVSLHFRKLLAGSTSAVDLEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKNTGYGSEPKVVAAVEKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGDDKSVPADMLILAGSAIANEAILTGESTPQWKVSITGRGIDEKLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFIMFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEELETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWIYKSDEKAIPRKGSGNAVQIVQRHHFASYLKRMAVVVRLQEEFFAFVKGAPETIQERLTDVPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLDRDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSMKGTEEYKWLSPDESQTVPYSEKEVGTLSETYDLCIGGDCIAMLQRTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPQSGNSSSEASKDEAVRSGKSKKSKPSSESSGKALVSGEGSSKSKVGAKLDSAAEQASNRARTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHVFCSYVLLSLLGQFAIHLCFLISSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGMRDKLLAWALLMFLCCYAWERLLRFMFPGKIPAWRKRQRLVAANLEKKKQV* 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16070029 16083431 - Chy5G102060.1 Chy05g01160 227387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01160 1191 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1185 - -
Chy05g01160 1191 PANTHER CATION-TRANSPORTING ATPASE 1 1185 - -
Chy05g01160 1191 MobiDBLite consensus disorder prediction 832 902 - -
Chy05g01160 1191 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 42 1148 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Chy05g01160 1191 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1168 IPR023298 -
Chy05g01160 1191 SFLD C1.7: P-type atpase like 469 954 - -
Chy05g01160 1191 Coils Coil 895 915 - -
Chy05g01160 1191 CDD P-type_ATPase_cation 170 1106 - -
Chy05g01160 1191 Pfam Cation transport ATPase (P-type) 540 617 - -
Chy05g01160 1191 Gene3D - 224 388 - -
Chy05g01160 1191 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Chy05g01160 1191 Gene3D - 483 668 IPR023299 GO:0000166
Chy05g01160 1191 Pfam E1-E2 ATPase 256 468 - -
Chy05g01160 1191 SUPERFAMILY HAD-like 483 833 IPR036412 -
Chy05g01160 1191 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Chy05g01160 1191 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Chy05g01160 1191 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Chy05g01160 1191 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Chy05g01160 1191 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
Chy05g01160 1191 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Chy05g01160 1191 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 517 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01160 1191 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01160 1191 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Chy05g01160 1191 MobiDBLite consensus disorder prediction 846 860 - -
Chy05g01160 1191 Gene3D - 669 846 IPR023214 -
Chy05g01160 1191 SFLD p-type atpase 469 954 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01160 Chy-Chr5:16070029 Chy07g00189 Chy-Chr7:1548092 9.59E-19 dispersed
Chy05g01160 Chy-Chr5:16070029 Chy09g00272 Chy-Chr9:2252574 1.98E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01160 K14950 - csv:101215828 2323.51