Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01188 ATGAAAGTTACTGAGTTTTGGATTGGGGAAGATGAAATTATGGACAAAGATCTTTCTAATTCAAGGATCGTTGAATTGTTGCACCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAGGATCTACTTCTTCATTGCCTCTAGAAATATTCGGGAGTCCAACTGAGAAAGCGATACTTTCGTGGGCCGTGTTCGACTTGGATTTGAACCTTGATGAATTGAAGAAGCAACATGAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGGGTTTCGACAAGACGCTATGGGGAGAAGTTTATCCATACACATTGGAAGGGAGCAGCCGAGATGATATTGACAATGTGCTCATATTATTATAACAAACAGGGAACAGTTAGAGGCATTGATGATGAAGCAAGAAGACGATTGATTGCGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGCATAGCCTTCGCCCAGAAGCAAAACGAAGACAACGAAAACCCAGAAGTTCCTACTAAACTTGACGAATCGGGATTGACATTACTTGGAATAGTCGGTTTGAAGGATCCTTGTAGGCCAGGAGTTAGAGAAGCTATAGAATCATGTAAAGCGGCAGGAGTGGACATCAAAATGGTAACAGGTGATAACTTACACACAGCAACAGCTATAGCAATGGAATGTGGGATACTAAATCCCAACGACGATACGAACAACGACGAAGTTGTAGTCGAGGGGATAAGATTTAGAAACTACACACCTGAGGAGAGACTAGAAAAGATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTAATGGTACAATGCTTGAAGAATTTAGGCCATGTGGTGGCAGTTACTGGGGATGGAACAAATGATGCCCCAGCTCTTCATGCAGCAGACATTGGTCTTTCGATGGGAATTCAAGGAACGGAAGTCGCAAAAGAGAGCTCGGACATCGTCATCTTAGACGACAACTTTACGTCGGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAATAACATCCAAAAGTTCATTCAATTTCAACTCACAGTGAATGTTGCAGCATTAGTAGTGAACTTCATTGCTGCTGTTTCATCAGGTAAAGTTTCTTTAACAGCAGTTCAGTTATTATGGGTGAATCTCATAATGGACACCATGGGAGCTTTAGCCTTAGCCACCGAGCAACCCACGAATGATCTCATGGAAAAGAAGCCAGTCGGACGAACCGAACCATTGGTGACGAAAGTCATGTGGAGAAATCTCATTGCACAGGCTGTGTATCAAGTGACAGTCTTATTGGTTTTGGAGTTTAAAGGAGGTGTCATCTTTAATGTGGAGGGAAAGGTCAAGGACACGCTCATTTTCAATACATTTGTGCTATGCCAAATCTTTAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATATTTGAAGGGATACATAAAAGCAAGGTGTTTTTGGGAATAATTGTTATAACTTTGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACAAGAAGGTTGAATTTGGGGCAATGGGGAATATGTATTGCCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCTAAGTTAATACCAGTTTCTGCTCTTCACTTTCCAAGGAGAAATTAG 1677 41.5 MKVTEFWIGEDEIMDKDLSNSRIVELLHQAVGLNTTGSVQGSTSSLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSTRRYGEKFIHTHWKGAAEMILTMCSYYYNKQGTVRGIDDEARRRLIATITTMAGKSLRCIAFAQKQNEDNENPEVPTKLDESGLTLLGIVGLKDPCRPGVREAIESCKAAGVDIKMVTGDNLHTATAIAMECGILNPNDDTNNDEVVVEGIRFRNYTPEERLEKIGNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHAADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVSLTAVQLLWVNLIMDTMGALALATEQPTNDLMEKKPVGRTEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGGVIFNVEGKVKDTLIFNTFVLCQIFNEFNARKMEKKNIFEGIHKSKVFLGIIVITLGFQVVMVELLGRFANTRRLNLGQWGICIAIAALSWPIGWLSKLIPVSALHFPRRN* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16366841 16368517 - Chy5G102340.1 Chy05g01188 227415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01188 558 Pfam haloacid dehalogenase-like hydrolase 182 306 - -
Chy05g01188 558 SUPERFAMILY HAD-like 139 396 IPR036412 -
Chy05g01188 558 Gene3D - 338 545 - -
Chy05g01188 558 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 21 549 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Chy05g01188 558 SUPERFAMILY Calcium ATPase, transmembrane domain M 342 550 IPR023298 -
Chy05g01188 558 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 196 IPR023299 GO:0000166
Chy05g01188 558 PANTHER CATION TRANSPORTING ATPASE 1 541 - -
Chy05g01188 558 Gene3D - 192 337 IPR023214 -
Chy05g01188 558 Pfam Cation transporting ATPase, C-terminus 379 547 IPR006068 -
Chy05g01188 558 PRINTS H+-transporting ATPase (proton pump) signature 324 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01188 558 PRINTS H+-transporting ATPase (proton pump) signature 141 159 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01188 558 PRINTS H+-transporting ATPase (proton pump) signature 292 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01188 558 PANTHER CALCIUM-TRANSPORTING ATPASE 1 541 - -
Chy05g01188 558 PRINTS P-type cation-transporting ATPase superfamily signature 316 328 - -
Chy05g01188 558 PRINTS P-type cation-transporting ATPase superfamily signature 206 216 - -
Chy05g01188 558 PRINTS P-type cation-transporting ATPase superfamily signature 184 195 - -
Chy05g01188 558 PRINTS P-type cation-transporting ATPase superfamily signature 292 311 - -
Chy05g01188 558 Pfam Cation transport ATPase (P-type) 49 122 - -
Chy05g01188 558 Gene3D - 24 191 IPR023299 GO:0000166
Chy05g01188 558 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 263 373 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01188 Chy-Chr5:16366841 Chy07g00189 Chy-Chr7:1548092 2.08E-158 dispersed
Chy05g01188 Chy-Chr5:16366841 Chy03g01604 Chy-Chr3:17967781 5.82E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01188 K01537 - csv:101218531 1085.86