Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy05g01223 | ATGGCAAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAATTGATCATACTTCGACAAGCTCCTCTGCTATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGTCCTGTTCACAGTGGTGGTGATGACGATGACGATAGGGATAACGGTGGGGATGAACCTAAAGAAGGAGCAGTTGAGGTTCCAACGCGTCGTCCCCGTGGCCGACCGCCGGGATCCAAGAATAAGCCTAAGCCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATTGCCGAGAGCGTTGCTCAATTCGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGTAGCGGTACGGTGACAAATGTCACACTCCGACAACCGTCTGCGCCTGGTGCAGTCTTAGCCCTCCAGGGACGATTCGAGATACTTTCTTTAACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCAACCGGACTAACGATCTACTTGGCTGGTGGACAAGGGCAAGTGGTGGGTGGCAGCGTCGTCGGGCCACTCACCGCTGCTGGCCCAGTGATGGTGATTGCTGCAACATTTTCCAACGCAACATACGAAAGATTACCCTTAGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCGGCAGGCGGTGGCGGCGCAGGCGAAGGTTCACCACAAGGCATCGGAGGCGGAGTCGGGGATCCATCAGCTATGACTCCACTGTACAATTTACCACCAAATTTACTACCGAATGGCGGCGGAGGGCAGATGAACCAAGAGGCTTATTCTTGGGCTCACGGTGGCCGGCCGTCATTTTAA | 879 | 54.27 | MANRWWTSGQMGLPGIDHTSTSSSAMRKPDLGISMNDNGGPVHSGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLALQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGGAGEGSPQGIGGGVGDPSAMTPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF* | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 16655920 | 16656975 | + | Chy5G102690.1 | Chy05g01223 | 227450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy05g01223 | 292 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 98 | 210 | IPR005175 | - | |
| Chy05g01223 | 292 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 7 | 291 | IPR014476 | GO:0003680 | |
| Chy05g01223 | 292 | Gene3D | - | 97 | 223 | - | - | |
| Chy05g01223 | 292 | MobiDBLite | consensus disorder prediction | 43 | 68 | - | - | |
| Chy05g01223 | 292 | CDD | DUF296 | 97 | 180 | IPR005175 | - | |
| Chy05g01223 | 292 | PIRSF | ESCAROLA | 10 | 292 | IPR014476 | GO:0003680 | |
| Chy05g01223 | 292 | ProSiteProfiles | PPC domain profile profile. | 93 | 231 | IPR005175 | - | |
| Chy05g01223 | 292 | MobiDBLite | consensus disorder prediction | 13 | 29 | - | - | |
| Chy05g01223 | 292 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 7 | 291 | - | - | |
| Chy05g01223 | 292 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Chy05g01223 | 292 | MobiDBLite | consensus disorder prediction | 219 | 292 | - | - | |
| Chy05g01223 | 292 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 94 | 221 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy05g01223 | Chy-Chr5:16655920 | Chy10g00525 | Chy-Chr10:11822713 | 7.79E-79 | dispersed | |
| Chy05g01223 | Chy-Chr5:16655920 | Chy06g00491 | Chy-Chr6:3305545 | 1.49E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy05g01223 | - | - | csv:101220902 | 468.388 |