Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01226 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAACTCCCACCACCACATCGCCGACCAATGGCCTTCTTCCACCTACCCACCACCTCTCCGCCGCCGCTGCCTCCTCCGACGCCGGTCCTCATGTTGTATACCCTCACTCCGTCCCTTCCGCCGCCGTCTCTTCTTCTCCTCTTGAGCCCGCACGTCGGAAGAGAGGTCGGCCGAGGAAGTACGGAACGCCGGAGGAAGCTTTAGCGGCTAAGAAAGCTGCTACGGCCTCGTCTCACTCTTCGTCTTCTAAGGCTAAGAAGGAACTCGCTTCTTCTTCTTCTCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCAACGCCTTCTAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACATGTTATTAATGTTGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGCAGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCAATCTCCAATGCATCTCTCCGTCAGCCAGCCGCATCAGGAGGCAATATTGCATATGAGGGACGTTTTGAGATTGTTTCATTATGCGGATCTTATGTACGAACTGACCTTGGAGGAAAGACTGGTGGTCTTAGTGTATGTCTATCAAGTGCTGAAGGGCATATCATAGGAGGGGGAGTTGGTGGACCATTGAAGGCCGCTGGACCCGTGCAGGTTATTGTTGGAACCTTTGTAATCGACCCAAAGAAAGAATTTGGTCGTGGTAAAGGTGATGGATCTGCTGGCAAGTTGCCCTCACCTATTGGTGGGACATCGATGTCAAATCTACGCTATGGCTCCAACATTGACTCTGGAGGTAATCAAATAAGGGGAAATGATGAACATCAAGGTCTTGGGGAGAGTCATTTTTTGCTTCAGCCACGGGGAGTGAATCTGACATCACCACGATCAACGGATTGGAGGACGGGTCTGGATGCCACAAACACTGCTTATGATTTGTCAGGAAGAACAGGCCATCATTCTCCTGAAAACGGAGATTACGATCAGATTCCTGATTGA 1089 49.77 MEPNENQLSSYFHHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSTPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEFGRGKGDGSAGKLPSPIGGTSMSNLRYGSNIDSGGNQIRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLSGRTGHHSPENGDYDQIPD* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16689179 16694729 - Chy5G102720.1 Chy05g01226 227453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01226 362 CDD DUF296 144 254 IPR005175 -
Chy05g01226 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 353 IPR039605 GO:0003680
Chy05g01226 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 255 - -
Chy05g01226 362 MobiDBLite consensus disorder prediction 264 305 - -
Chy05g01226 362 MobiDBLite consensus disorder prediction 1 106 - -
Chy05g01226 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 255 IPR005175 -
Chy05g01226 362 MobiDBLite consensus disorder prediction 340 362 - -
Chy05g01226 362 ProSiteProfiles PPC domain profile profile. 138 276 IPR005175 -
Chy05g01226 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 353 - -
Chy05g01226 362 MobiDBLite consensus disorder prediction 277 301 - -
Chy05g01226 362 Gene3D - 144 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01226 Chy-Chr5:16689179 Chy03g01005 Chy-Chr3:13564868 1.36E-48 dispersed
Chy05g01226 Chy-Chr5:16689179 Chy06g00871 Chy-Chr6:6294210 4.00E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01226 - - csv:101221844 582.022