Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01236 ATGGCGGATAAAGGCAGAGACGGCGGTCATTCAAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGTACCTTCGCTAAGGTTTATCATGCTCGGAATCTGAGGACGGGGAAGAGTGTTGCGATGAAAGTGGTTGGGAAGGAGAAGATAATCAAAGTCGGTATGATGGAGCAGATTAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTAATGGCGAGTAAATCGAAGATCTATTTCGCTATGGAGTTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGCTACGAGAGGATGTAGCTAGAGTTTACTTTCAACAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAATCTCCTTCTCGATGAAGACGGTAACCTTAAGGTAACCGATTTCGGCCTCACCGCTTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGCGGCACTCCGGCGTACGTCGCACCAGAGGTCATCGGAAAGCATGGATACGACGGCGCCAAGGCCGACCTGTGGTCATGTGGAGTCATCCTATACGTTCTTCTCGCCGGATACCTTCCATTCCAAGACGACAACATGGTGGCCATGTACAGGAAGATTTACAGAGGCGACTTCAAATGTCCGTCGTGGTTCTCCCCTGAAGCCCGTCGGCTCATCACGAAGCTGCTAGATCCAAATCCCGTGACCAGAGCCGGTATCACGAAGATTACATCCTCTTCTTGGTTCAAGAAATCAGTACCAAAAACTCTGATTACAAAGGATGAACAAGAACAAACAGAGGAGAATTTCACAAAATCAAAGCCACCGGCGGAAACATTAAACGCGTTCCACATAATATCTCTATCGGAAGGGTTTGATCTATCGCCATTGTTTGAAGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCAACATCGTCGACGGCGAGCAGTGTAATCTCAAAGCTTGAGGAAGTGGGGAAGGCGGTGAAGTTCGATGTGAAGAAGAGCGAAACATGGGTTAGATTGCAAGGGCAGGAGATGGGGAGAAAAGGGAAACTGACGATTGCAGCGGACATCTTTGCTATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGATAACGGAGATACATTGGAATATAATCAGTTCTGTAGGAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACTTCTCCGACGGGGAATTCAACTCCAGCTTGA 1302 48.0 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKHGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPSWFSPEARRLITKLLDPNPVTRAGITKITSSSWFKKSVPKTLITKDEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSTASSVISKLEEVGKAVKFDVKKSETWVRLQGQEMGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16762980 16764281 + Chy5G102820.1 Chy05g01236 227463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01236 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Chy05g01236 433 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Chy05g01236 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01236 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01236 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01236 433 CDD STKc_SnRK3 17 271 - -
Chy05g01236 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Chy05g01236 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Chy05g01236 433 Gene3D Kinase associated domain 1, KA1 299 424 - -
Chy05g01236 433 Gene3D Transferase(Phosphotransferase) domain 1 98 298 - -
Chy05g01236 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Chy05g01236 433 CDD CIPK_C 304 419 - -
Chy05g01236 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 430 - -
Chy05g01236 433 PANTHER - 10 430 - -
Chy05g01236 433 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00224 Chy-Chr2:1500044 Chy05g01236 Chy-Chr5:16762980 0 dispersed
Chy04g01342 Chy-Chr4:20031321 Chy05g01236 Chy-Chr5:16762980 1.51E-168 dispersed
Chy05g01236 Chy-Chr5:16762980 Chy12g00083 Chy-Chr12:837203 0 dispersed
Chy11g01388 Chy-Chr11:20292311 Chy05g01236 Chy-Chr5:16762980 9.63E-158 dispersed
Chy05g01236 Chy-Chr5:16762980 Chy02g02108 Chy-Chr2:25413498 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71282 PF00069 Pkinase 8.30E-73 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01236 - K07198 csv:101208458 854.744