Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01238 ATGAGACTCACCAACTCTCTCCCGGACTTCCATACCCATCGCCGTAACCCTCCGCAGGAGACCGACGCCTCTCAACTCCACCACCACCGCCAACTTCAAACCTCTCTCTTCCATCCTTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCACTGTCCCCTCTCCCTGGGAACTCCCCCCTGGTCTCCCTTCCCAACCATTGCCGCCATCTAATCCCGACAATGTTGAGTTTCACGTCGGCGAAACAACTCCGGCGGCTAAAATGGCCATGTCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCCCTGCCTCCGCCGGCGATGATTGCGGTCTTCTTCCAATGCCTGGTAACAACGTCGTTGAAGTAGACGGCTCTTCTTCTTCGTCTTTCAAATGCCCTAATCCGACTGATCATGGTTCTGTCGTTCCTTCTCTTTTCAACGAATTCGCCGGGTTTCTGAACTCCTCCGGTCCCGGCAGCCAGAATCAGAATCAATCTCAGGGGAACTCAAACTCTCAGATACCGAACTTCGGAGCTCCGGTATCAGCCAGTACACCACCTCCGGCCGGGCCTAGCTCCTGCGGCGGTGTTGCAGCAGCAGCAGCACCGGGTCAGCCCCGGCAGCGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCCGAAAGATTACGGAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTTGTTCCCAACGCTAACAAGACAGACAAGGCTTCTATGTTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCTGCCATGCCTTCCCGTCCACCCGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACTAATGGGGCCAGTGGGCAGACTTCCACTGGAGCTCCGTCGAGTAACGACGCGATGACAGTGACGGAGCACCAGGTTGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATTTCTCTCGCCACCGCTATCTCCACCGCTACATGTCACAGCCGCCCAATCACGGCGTCCAAGGGCCGAGGAGAGCCCCCCACCTCTCCTAGCCTTTCGGCGTTGACCGTCCAGTCAACTGCCTTGGGTAACGGCACCGTCGACAAACCCGTCAGAGACACCGTCTCCGTTTCCCGGCCGTGA 1263 55.98 MRLTNSLPDFHTHRRNPPQETDASQLHHHRQLQTSLFHPSSFSSDDFLDQILSTVPSPWELPPGLPSQPLPPSNPDNVEFHVGETTPAAKMAMSLLQQQLLMSRGIAPASAGDDCGLLPMPGNNVVEVDGSSSSSFKCPNPTDHGSVVPSLFNEFAGFLNSSGPGSQNQNQSQGNSNSQIPNFGAPVSASTPPPAGPSSCGGVAAAAAPGQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSRPPDLSTEGGTECNQSNGTNGASGQTSTGAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPITASKGRGEPPTSPSLSALTVQSTALGNGTVDKPVRDTVSVSRP* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16774374 16778464 - Chy5G102840.1 Chy05g01238 227465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01238 420 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Chy05g01238 420 PANTHER TRANSCRIPTION FACTOR BHLH69 39 381 - -
Chy05g01238 420 MobiDBLite consensus disorder prediction 1 30 - -
Chy05g01238 420 SMART finulus 228 277 IPR011598 GO:0046983
Chy05g01238 420 MobiDBLite consensus disorder prediction 7 27 - -
Chy05g01238 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 280 IPR036638 GO:0046983
Chy05g01238 420 MobiDBLite consensus disorder prediction 377 420 - -
Chy05g01238 420 MobiDBLite consensus disorder prediction 299 328 - -
Chy05g01238 420 MobiDBLite consensus disorder prediction 158 186 - -
Chy05g01238 420 MobiDBLite consensus disorder prediction 384 405 - -
Chy05g01238 420 Gene3D - 217 279 IPR036638 GO:0046983
Chy05g01238 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 381 - -
Chy05g01238 420 MobiDBLite consensus disorder prediction 158 231 - -
Chy05g01238 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Chy05g01238 420 MobiDBLite consensus disorder prediction 286 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01540 Chy-Chr1:21226903 Chy05g01238 Chy-Chr5:16774374 8.02E-57 dispersed
Chy02g01133 Chy-Chr2:8021112 Chy05g01238 Chy-Chr5:16774374 9.69E-36 dispersed
Chy02g01134 Chy-Chr2:8027082 Chy05g01238 Chy-Chr5:16774374 3.05E-16 dispersed
Chy05g00458 Chy-Chr5:4963075 Chy05g01238 Chy-Chr5:16774374 5.39E-14 dispersed
Chy05g01006 Chy-Chr5:14729633 Chy05g01238 Chy-Chr5:16774374 5.19E-19 dispersed
Chy05g01238 Chy-Chr5:16774374 Chy07g00212 Chy-Chr7:1716195 7.53E-23 dispersed
Chy12g01515 Chy-Chr12:18950958 Chy05g01238 Chy-Chr5:16774374 1.19E-19 dispersed
Chy05g01238 Chy-Chr5:16774374 Chy02g02104 Chy-Chr2:25359984 5.71E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18034 PF00010 HLH 1.60E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01238 - - csv:101222794 692.189