Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01239 ATGGCGGGTAATGGGGTTTTTGCAGACATTTTCGACGGTGAAGTCTACAAATACTATTCAGAAGGTGAATGGAAGAAATCCTCCTCAGGGAAATCTGTTGCCATCATCAACCCCACTACTAGGAAGACCCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAATCTGCTCAGAAATTATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCTAAACCAGCCAAAGATGCAGTCACTGAGGTTGTGAGGTCGGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATTTTGGGTGAAGGGAAGTTCTTGGTTTCTGATAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTTTCAAAAATTGCCCCGGCTTTAATTGCTGGAAATTCTATTGTACTCAAGCCTCCAACTCAGGGCGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACGGGAAAAGGTTCCGAGATTGGTGATTTCCTCACAATGCATCCGGGTGTCGACTGTATAAGCTTTACTGGTGGGGATACCGGTGTTGCAATTTCAAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGGGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTTGATTTAGTTGCCGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAATCTGTCGCAGATGCTTTAGTCGAGAAAGTAAAGGCACGAGTGGCTAAATTAACTGTTGGTGCTCCTGAAGACGACTCAGACATTACTCCAGTTGTGACTGAGTCATCGGCAAACTTCATTGAAGGACTGGTTATGGATGCAAAGGAAAAGGGTGCAACATTTTGCCAAGAGTACAAAAGAGAGGGCAACCTAATTTGGCCCTTGTTATTAGATAATGTTAGGCCTGATATGAGGATTGCTTGGGAGGAACCTTTTGGCCCAGTTTTGCCAGTCATTAGGATCAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAATTTTGGACTTCAGGGATGTGTCTTCACGAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGAACAGTTCAAATCAACTCAGCACCTGCTCGAGGACCCGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCCCAAGGTGTTACTAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCTACACCGTCCTACACCATGGGTTAG 1491 44.6 MAGNGVFADIFDGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16782046 16785345 - Chy5G102850.1 Chy05g01239 227466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01239 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Chy05g01239 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Chy05g01239 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Chy05g01239 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Chy05g01239 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Chy05g01239 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Chy05g01239 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Chy05g01239 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Chy05g01239 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01239 K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] - csv:101208699 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01239 Chy-Chr5:16782046 Chy11g01046 Chy-Chr11:14923094 1.83E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g660 . Blo16g00815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g00312 Chy05g01239 . . . . . . . . . . . . . . . . . . Bhi06g01787 . . . . . . . . . . . . . Lsi11g00444 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01912 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.4 1.7e-211 732.3
Chy02g02570 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 6.5e-155 544.3
Chy02g02570 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 2.7e-255 877.9
Chy02g01912 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 55.6 3.8e-161 565.1
Chy02g02570 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 4.6e-167 584.3
Chy02g01912 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 6.8e-102 367.9
Chy07g00628 . 13 490 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 2.8e-180 628.6
Chy07g00627 . 3 494 Aldehyde Dehydrogenase Gene Family AT4G34240 61.6 6.7e-174 607.4
Chy07g00628 . 78 488 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 1.1e-179 626.3
Chy07g00627 . 72 492 Aldehyde Dehydrogenase Gene Family AT1G44170 68.6 3.2e-171 598.2
Chy05g00127 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.9 1.4e-118 423.3
Chy07g01274 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 3.6e-114 408.7
Chy07g01274 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 1.4e-183 639.4
Chy05g00127 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.6 1.4e-159 559.7
Chy11g01046 . 37 529 Aldehyde Dehydrogenase Gene Family AT1G79440 77.1 7.9e-228 786.6
Chy01g00197 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.7 5.2e-236 813.9
Chy02g00769 . 193 699 Aldehyde Dehydrogenase Gene Family AT2G14170 60.7 1.4e-177 619.8
Chy02g02550 . 71 571 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 2.4e-250 861.3
Chy02g02550 . 71 574 Aldehyde Dehydrogenase Gene Family AT3G48170 80.4 3.4e-252 867.5
Chy05g01239 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.9 2.6e-268 921.0
Chy12g01328 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 5.4e-259 890.2
Chy11g01565 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g01239 Chy_Chr05 FPKM 13.401864 14.103831 98.035568 93.963997 69.685715 68.76265 68.382927 20.711763 21.610006 23.123402