Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy05g01245 | ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAAGTTCGGGGGTTAATAATACCAAGCCATGGCCTATGCATTGTGAATTCTTGCAGAATCAGATGGGGAATCCTGATAAGGAGTCTGCTCTAACTGGAACCAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAAGAAAGAGAACCCAACTACTTTTGCTCCAGCTCTTAGATCAGGGGAATGGTCCGACATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGACATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTAATTGTTGATGATTCTGACTTTCCTTTAGAGCTTGAAAAGGTTGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCGTGAAACATCTCTATCTTCTGGCACAACTGCACTTACTGCCATGATATTTGGAAGATCTTTGCTTGTAGCAAATGCTGGCGATTGCCGAGCAGTACTATCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGATCATAGGCCTTGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTAGGCGGATTCATCGATGATGATGATTACCTAAACGGTCTGCTGGGAGTTACACGTGCTATAGGAGATTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGCGCAGAACCTGAACTTAGATTAATGACATTAACAAAGGAAGACGAGTTCTTGATCATAGGTAGCGATGGAATATGGGATGTCTTTACAAGTCAAAACGCCATCGATTTTGCTCGGAGGAAGCTCCAAGAACACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTATTGGTTAGCTTTCATTTGGAGCCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATGTCTCCTAGAAGGTTAG | 1149 | 43.52 | MCVTDAEQVGTERPSSGVNNTKPWPMHCEFLQNQMGNPDKESALTGTSDRTRSGNSFPLESISEDAAVIDKKENPTTFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVDDSDFPLELEKVVTRSFMETDAAFARSCTRETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRKLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKCLLEG* | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 16855973 | 16860646 | + | Chy5G102910.1 | Chy05g01245 | 227472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy05g01245 | 382 | CDD | PP2Cc | 83 | 349 | IPR001932 | - | |
Chy05g01245 | 382 | SMART | PP2C_4 | 73 | 347 | IPR001932 | - | |
Chy05g01245 | 382 | ProSiteProfiles | PPM-type phosphatase domain profile. | 83 | 349 | IPR001932 | - | |
Chy05g01245 | 382 | Pfam | Protein phosphatase 2C | 95 | 341 | IPR001932 | - | |
Chy05g01245 | 382 | ProSitePatterns | PPM-type phosphatase domain signature. | 122 | 130 | IPR000222 | GO:0043169 | |
Chy05g01245 | 382 | Gene3D | - | 65 | 352 | IPR036457 | - | |
Chy05g01245 | 382 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 370 | IPR015655 | GO:0004722|GO:0006470 | |
Chy05g01245 | 382 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 1 | 370 | - | - | |
Chy05g01245 | 382 | SUPERFAMILY | PP2C-like | 76 | 350 | IPR036457 | - | |
Chy05g01245 | 382 | MobiDBLite | consensus disorder prediction | 35 | 57 | - | - | |
Chy05g01245 | 382 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01939 | Chy-Chr1:24635573 | Chy05g01245 | Chy-Chr5:16855973 | 1.03E-36 | dispersed | |
Chy05g01245 | Chy-Chr5:16855973 | Chy07g00407 | Chy-Chr7:3226570 | 2.06E-97 | dispersed | |
Chy06g01185 | Chy-Chr6:10603003 | Chy05g01245 | Chy-Chr5:16855973 | 1.75E-30 | dispersed | |
Chy05g01245 | Chy-Chr5:16855973 | Chy01g01787 | Chy-Chr1:23499833 | 2.13E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18036 | PF00481 | PP2C | 1.30E-66 | CL0238 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy05g01245 | K14803 | - | csv:101210349 | 758.829 |