Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01245 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAAGTTCGGGGGTTAATAATACCAAGCCATGGCCTATGCATTGTGAATTCTTGCAGAATCAGATGGGGAATCCTGATAAGGAGTCTGCTCTAACTGGAACCAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAAGAAAGAGAACCCAACTACTTTTGCTCCAGCTCTTAGATCAGGGGAATGGTCCGACATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGTTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGACATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTAATTGTTGATGATTCTGACTTTCCTTTAGAGCTTGAAAAGGTTGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCGTGAAACATCTCTATCTTCTGGCACAACTGCACTTACTGCCATGATATTTGGAAGATCTTTGCTTGTAGCAAATGCTGGCGATTGCCGAGCAGTACTATCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGATCATAGGCCTTGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTAGGCGGATTCATCGATGATGATGATTACCTAAACGGTCTGCTGGGAGTTACACGTGCTATAGGAGATTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGCGCAGAACCTGAACTTAGATTAATGACATTAACAAAGGAAGACGAGTTCTTGATCATAGGTAGCGATGGAATATGGGATGTCTTTACAAGTCAAAACGCCATCGATTTTGCTCGGAGGAAGCTCCAAGAACACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTATTGGTTAGCTTTCATTTGGAGCCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAATGTCTCCTAGAAGGTTAG 1149 43.52 MCVTDAEQVGTERPSSGVNNTKPWPMHCEFLQNQMGNPDKESALTGTSDRTRSGNSFPLESISEDAAVIDKKENPTTFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVDDSDFPLELEKVVTRSFMETDAAFARSCTRETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRKLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKCLLEG* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16855973 16860646 + Chy5G102910.1 Chy05g01245 227472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01245 382 CDD PP2Cc 83 349 IPR001932 -
Chy05g01245 382 SMART PP2C_4 73 347 IPR001932 -
Chy05g01245 382 ProSiteProfiles PPM-type phosphatase domain profile. 83 349 IPR001932 -
Chy05g01245 382 Pfam Protein phosphatase 2C 95 341 IPR001932 -
Chy05g01245 382 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Chy05g01245 382 Gene3D - 65 352 IPR036457 -
Chy05g01245 382 PANTHER PROTEIN PHOSPHATASE 2C 1 370 IPR015655 GO:0004722|GO:0006470
Chy05g01245 382 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 370 - -
Chy05g01245 382 SUPERFAMILY PP2C-like 76 350 IPR036457 -
Chy05g01245 382 MobiDBLite consensus disorder prediction 35 57 - -
Chy05g01245 382 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01939 Chy-Chr1:24635573 Chy05g01245 Chy-Chr5:16855973 1.03E-36 dispersed
Chy05g01245 Chy-Chr5:16855973 Chy07g00407 Chy-Chr7:3226570 2.06E-97 dispersed
Chy06g01185 Chy-Chr6:10603003 Chy05g01245 Chy-Chr5:16855973 1.75E-30 dispersed
Chy05g01245 Chy-Chr5:16855973 Chy01g01787 Chy-Chr1:23499833 2.13E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18036 PF00481 PP2C 1.30E-66 CL0238 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01245 K14803 - csv:101210349 758.829