Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01254 ATGACTAATATTTCATTGGAAGATGTAAGAAACGAGAATATTGACCTGGAGAGGATTCCAATTGAAGAGGTATTTGAGCAACTGAAATGCAATAGAAATGGTTTGTCATCTGAGGAAGGAGAAAAAAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCTCAAGTTTTTAGGGTTCATGTGGAATCCCCTTTCATGGGTCATGGAGTGTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATTGTGGTGTTACTCATTATCAACTCCACCATTAGTTTTATTGAAGAGAACAATGCAGGAAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCCAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATTAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGAGATCCTCTTAAGATCGATCAATCTGCTCTCACTGGAGAATCCTTGCCGGTTACTAAGAACCCGGGCGACGAGGTTTTCTCGGGCTCGACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCATACCTTCTTTGGGAAGGCAGCTCATCTTGTTGATAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTATTGGGATGCTCATTGAGATCTTAGTGATGTACCCAATCCAAAATAGAGCATACAGAGAGGGAATTGATAACTTGCTGGTTCTTCTCATTGGTGGCATTCCAATCGCCATGCCGACGGTATTATCAGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAACAAGGTGCTATTACCAAAAGAATGACAGCCATTGAAGAAATGGCAGGAATGGATGTACTTTGCAGTGACAAAACTGGAACTCTCACCCTCAACAAGCTGACGGTGGACAAAAGTCTGGTTGAAGTATTTTCAAAGAATACTGATGCAGACACATTACTTCTATTGGCCGCAAGAGCTTCAAGAGTGGAGAACCAGGATGCCATTGATGCTTCGATCGTCGGGATGTTGGGTGATCCTAAAGAGGCAAGATCAGGGATCACTGAGGTACATTTCTTGCCTTTCAATCCTGTTGAGAAGCGCACTGCTATCACCTACATCGATAGTAATGGAAACTGGCATAGAAGCAGCAAGGGTGCTCCCGAACAGATCATCGACCTTTGTGACCTCAAAGGGGAAAGAAGGAAGAAGGCTCATAATATTATCAGCAATTATGCAGACCGTGGTCTTCGTTCTCTAGCTGTCGCACGCCAGACTGTTCTAGAGAAGACTAAGGAGAGTACTGGAGAACCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGGGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAAACCGGTCGCAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAAGCAATTGCTAGCATTCCTGTTGAAGAACTTATTGAGAAGGCGGATGGTTTCGCTGGTGTCTTCCCAGAACACAAGTATGAGATTGTGAAAAAGCTCCAAGAGAGGAAGCACATTTGTGGGATGACTGGTGACGGCGTCAACGATGCCCCTGCACTCAAGAAGGCTGACATTGGAATTGCTGTAGCTGATGCAACAGATGCAGCAAGGGGTGCATCAGATATTGTTTTAACGGAACCAGGTCTAAGCGTGATCGTGAGCGCAGTTCTAACAAGTAGAGCCATTTTTCAAAGGATGAAAAACTACACAATCTATGCAGTTTCCATCACGATTCGAATCGTGTTAGGTTTCTTGCTTGTAGCTTTAATATGGAAGTTTGACTTCTCACCCTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGGGTGAAGCCATCACCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACAGGTGTTGTTCTCGGAACATACATGGCTGTCATGACTGTGGTCTTCTTTTGGCTAGCATATCAGACTGATTTTTTTCCAAAAACATTTGGGGTGAAGCACATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTCAGCATCATTAGCCAAGCCCTCATCTTTGTGACGCGATCGAGGAGTTGGTCCTTTGTAGAACGCCCCGGTCTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTTTTGGCAACTGTCATCGCTGTGTATGCCGAATGGGACTTTGCTAGGATTCATGGCATTGGTTGGGGATGGGCAGGAGTGATCTGGATTTACAGCATCATCACATACTTCCCTCTTGATATACTCAAGTTCATTATCCGCTACGCATTGAGTGGGAAGGCCTGGGATAATATGCTTCAAAACAAGACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATTAGCACAACGTACACTACACGGCTTACAGAAACCGGAAGCGCTATTTAGCGACACAAGTAGCTACCGAGAGCTTTCTGAGATAGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGATGAGTCAGAATGTATGA 2772 44.73 MTNISLEDVRNENIDLERIPIEEVFEQLKCNRNGLSSEEGEKRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEILVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLVEVFSKNTDADTLLLLAARASRVENQDAIDASIVGMLGDPKEARSGITEVHFLPFNPVEKRTAITYIDSNGNWHRSSKGAPEQIIDLCDLKGERRKKAHNIISNYADRGLRSLAVARQTVLEKTKESTGEPWDFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDEAIASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATGVVLGTYMAVMTVVFFWLAYQTDFFPKTFGVKHISENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGLLLVGAFLIAQLLATVIAVYAEWDFARIHGIGWGWAGVIWIYSIITYFPLDILKFIIRYALSGKAWDNMLQNKTAFTTKKDYGKGEREAQWALAQRTLHGLQKPEALFSDTSSYRELSEIAEQAKRRAEVARMSQNV* 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16898648 16903854 + Chy5G103000.1 Chy05g01254 227481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01254 923 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Chy05g01254 923 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Chy05g01254 923 Gene3D - 94 815 - -
Chy05g01254 923 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Chy05g01254 923 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Chy05g01254 923 Gene3D - 326 625 IPR023214 -
Chy05g01254 923 Gene3D - 341 488 IPR023299 GO:0000166
Chy05g01254 923 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Chy05g01254 923 Gene3D - 898 922 - -
Chy05g01254 923 SFLD Haloacid Dehalogenase 311 640 - -
Chy05g01254 923 Pfam E1-E2 ATPase 131 309 - -
Chy05g01254 923 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Chy05g01254 923 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 PANTHER CALCIUM-TRANSPORTING ATPASE 1 920 - -
Chy05g01254 923 SFLD p-type atpase 311 640 IPR044492 -
Chy05g01254 923 Coils Coil 900 920 - -
Chy05g01254 923 PANTHER PLASMA MEMBRANE ATPASE 1 920 - -
Chy05g01254 923 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 359 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy05g01254 923 SUPERFAMILY HAD-like 325 635 IPR036412 -
Chy05g01254 923 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Chy05g01254 923 Gene3D - 132 216 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Chy05g01254 923 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Chy05g01254 923 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02093 Chy05g01254 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01254 Chy-Chr5:16898648 Chy07g01591 Chy-Chr7:20061196 0 dispersed
Chy12g00153 Chy-Chr12:1735861 Chy05g01254 Chy-Chr5:16898648 1.32E-56 dispersed
Chy02g02093 Chy-Chr2:25241361 Chy05g01254 Chy-Chr5:16898648 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01254 K01535 - csv:101211582 1743.01