Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01255 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGTGACCAAGCACAATCCCTTGGTGACGGAACCGGCATCGGCCGAAGCGGAGATGCCGACGACAAGGCCACTCATCATTCCGTCCTTCGCAAATTCAAGGAGTTCATTCGTGGGTTTGAAGCCGACAAGAATGTTTTCCCTTATAGAGAAAGCCTTCTTCATAATCCCAAGTTTCTTCGCGTTGATATGGAGGATGTTAACGCTTTTGACTCCGATCTTCCGGCAAAGCTTCGATCTGCTCCTGCTGATTTCTTGCCTTTGTTTGAGACTGCTGCTGGGGAGGTTTTAATGAATTTGAAGACGAAGGTGGCTGGTGAGACTGGAGAAATGGTGGAGCCAGTGCCTGGTGATGTTCAAATTCTGCTAACGTCGAAGGAGGATTCGGTTTCGATGCGGTCCCTTGGGGCACAGTACATTTCAAAACTTGTTAAGATATCTGGAATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATTTGTAAAAACTGTAGAAGTACAACACGAGTTCCGTGTCGGCCAGGACTTGGAGGGGCAATTGTCCCTCGATCATGTACTCATGTTCCTCAGCCTGGAGAAGAACCATGCCCACTAGATCCCTGGATTGTGGTTCCTGACAAGAGCATGTATGTTGATCAACAGACTCTAAAACTGCAGGAAAACCCAGAAGATGTTCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGTCATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTACCAAGCTTCCAATTCTTCTACATCTCACAAAGGGGCAGTTGCAATCAGACAGCCTTATATCAGGGTTGTAGGCATTGAAGAATGTAATGAAACAAACTCCCGGGGCCCTGCATCCTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCTGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCTCCCTCTATATTTGGTCACGATGATGTGAAGAAGGCCGTAGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTGAGAGGTGACATAAATGTATTACTCTTGGGGGACCCGTCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTTTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGATAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAAACAATATCAATTGCTAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCTGCTGCTAATCCTCCATCAGGACGCTATGATGACCTTAAGACAGCACAGGATAACATCGATTTACAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTTAAAGATATAAGAATGTACAGTCAAGATAAGATTATAGCAAGCCACATAATAAAAGTCCATGCATCTGCTGGTGCAACCTTGGGTGAAAATAGAGCTTCCAAAGAAGAGAATTGGCTAAAGAGGTATATTCAATATTGTCGAACTCAATGTTATCCTCGTTTGTCAGAATCTGCATCTACAATGCTACAGAATAACTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAGGCTGCTGCAATTCCTATTACTGTAAGGCAGCTGGAAGCTATTGTAAGACTAAGCGAGGCACTTGCAAAAATGAAATTGTCCCATGTTGCCACTGAGGAAAACGTGCAGGAAGCTATTAGACTTTTTACTGTGTCAACAATGGACGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTGACTCCTGAAATTGCCAATGAAATTAAGCAAGCAGAAACTCAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGACTGATTGACGAGCTCGCCAAAATGGGGATGAACGAGTCAATTGTAAGCCCCTCTGAACCAATCAAACATTACAATTCTTAG 2163 43.27 MSGWDEGGIYYSDQAQSLGDGTGIGRSGDADDKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVDMEDVNAFDSDLPAKLRSAPADFLPLFETAAGEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDSVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLICKNCRSTTRVPCRPGLGGAIVPRSCTHVPQPGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQASNSSTSHKGAVAIRQPYIRVVGIEECNETNSRGPASFTTEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAGATLGENRASKEENWLKRYIQYCRTQCYPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEIANEIKQAETQIKRRIGIGNHISERRLIDELAKMGMNESIVSPSEPIKHYNS* 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16905791 16910710 - Chy5G103010.1 Chy05g01255 227482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01255 720 Pfam MCM N-terminal domain 41 112 IPR027925 -
Chy05g01255 720 CDD MCM5 337 650 - -
Chy05g01255 720 Gene3D - 314 669 IPR027417 -
Chy05g01255 720 Gene3D - 31 122 - -
Chy05g01255 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 63 676 - -
Chy05g01255 720 ProSiteProfiles MCM family domain profile. 333 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 374 389 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 462 475 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 498 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 293 305 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 569 584 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 143 158 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 169 181 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy05g01255 720 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 645 662 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy05g01255 720 ProSitePatterns MCM family signature. 442 450 IPR018525 GO:0003677|GO:0005524|GO:0006260
Chy05g01255 720 Pfam MCM OB domain 142 277 IPR033762 -
Chy05g01255 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 63 676 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 651 IPR027417 -
Chy05g01255 720 SMART mcm 138 652 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Chy05g01255 720 Gene3D - 142 277 IPR012340 -
Chy05g01255 720 Pfam MCM P-loop domain 320 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy05g01255 720 Gene3D - 169 227 - -
Chy05g01255 720 SUPERFAMILY Nucleic acid-binding proteins 42 299 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00002 Chy-Chr2:43817 Chy05g01255 Chy-Chr5:16905791 3.73E-99 dispersed
Chy04g01347 Chy-Chr4:20103179 Chy05g01255 Chy-Chr5:16905791 8.74E-107 dispersed
Chy04g02091 Chy-Chr4:26301887 Chy05g01255 Chy-Chr5:16905791 2.71E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01255 K02209 - csv:101211822 1393.25