Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01262 ATGACTGTGGAGGTTCGAAAGACTAATTTGGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACCAATCAGGCAGTTCAGGCACTTACAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCCGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCTCATAGCAATACTGAACTCGTAAAGAAGGGAGTTATTCACGGAGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTCCTTCGAAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGTATTAATGGAAATAACACTAGTCAAAGTTTTGAAGTTGCAAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTATGATGGAGATGAGAATTTGCACAGGAAGTTCGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAAAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAATCTGAGCAATGTAACAAGATGGGTGCATTTGGAGGTACACACACCTCCTTCAGGCCCATGGCATCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCGAATGCTACATTCTCACAGTATCCCTCTCGAGAAATAGTTGGCCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCTTCCTCTGGAATGATACAGTCCCATAAATTGAGTAACTCATTAAGTTTCATTGGGAAACCCCATCCAGCTTTCTTCCACACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCACCGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAATCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAACTTCCCTGATGCTAGAAGGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCCATTCGTTGATGTTACGACGACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGATAACTCTAGACAACCGAGAACCGTTAGACAGCGGCACAAGTGTTTCTAATATTTTGGGCCACAGTCAGTCTAACAAAAACTGGCCAGGTTCAATCCAGCTCCCCAAATTTGCATCTAATGTCTCGGTCACTGGAATTTACCCTCCTGATGGAATGCCCGGTACTTATTTGACAATTTCCTCTGCTCAGCCCGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGGGGATTCAAGTTCTCATCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGGATGGAAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATGGCAACCATAGTTCCATTGTGAGAGACTCTTTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGATCCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATGAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCACGATGGTGTGGAAATATCTACAATGAACACTTGGATGAACTACGATGGAAAAATCCCCATGGATCAAACAAAGCTACAACATGGATTTGCAAATTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGGCGAATTTGGATTTGACGCACAATCTCTCGGCTCATCGTGTATATGA 2100 41.29 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSINGNNTSQSFEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEESEQCNKMGAFGGTHTSFRPMASLNGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSFIGKPHPAFFHTNQPPHTFNGISMSPDHIQLHRDKRTLSFKESNLINDASSFTVSTNFPDARRAVGSSSNYDFGVSSHSLMLRRHKQQIHGDGEFGGQSSLKITLDNREPLDSGTSVSNILGHSQSNKNWPGSIQLPKFASNVSVTGIYPPDGMPGTYLTISSAQPDNDNFPVGFPSTSGDSSSHLDLRGDTQCYEELIGSVVEATDGRSKQQWEAAKQDYYGNHSSIVRDSFVSGNSVADPLIQSANQNNAICLGNMSSSSTNQLNIGAPTFIHDGVEISTMNTWMNYDGKIPMDQTKLQHGFANSSFNSLDELVNALSKQDQDQSIQINGEFGFDAQSLGSSCI* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16978136 16982096 + Chy5G103080.1 Chy05g01262 227489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01262 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Chy05g01262 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Chy05g01262 699 MobiDBLite consensus disorder prediction 146 215 - -
Chy05g01262 699 PIRSF RR_ARR_type-B 1 699 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy05g01262 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Chy05g01262 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Chy05g01262 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Chy05g01262 699 SMART REC_2 24 136 IPR001789 GO:0000160
Chy05g01262 699 Gene3D - 24 183 - -
Chy05g01262 699 Gene3D - 206 272 - -
Chy05g01262 699 SUPERFAMILY CheY-like 23 149 IPR011006 -
Chy05g01262 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Chy05g01262 699 CDD REC_typeB_ARR-like 26 140 - -
Chy05g01262 699 MobiDBLite consensus disorder prediction 149 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01262 K14491 ARR-B; two-component response regulator ARR-B family - csv:101203718 1358.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01262 Chy-Chr5:16978136 Chy07g00343 Chy-Chr7:2803571 1.00E-136 dispersed
Chy11g01951 Chy-Chr11:25550683 Chy05g01262 Chy-Chr5:16978136 9.65E-27 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy05g01262 Chy-Chr5:16978136 3.49E-09 transposed
Chy11g01950 Chy-Chr11:25549051 Chy05g01262 Chy-Chr5:16978136 2.58E-13 transposed
Chy09g01472 Chy-Chr9:16142628 Chy05g01262 Chy-Chr5:16978136 2.09E-23 transposed
Chy12g01526 Chy-Chr12:19020856 Chy05g01262 Chy-Chr5:16978136 2.86E-18 transposed
Chy02g02099 Chy-Chr2:25279827 Chy05g01262 Chy-Chr5:16978136 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy10g00941 . 1 175 Response Regulator Gene Family AT1G59940 65.4 5.8e-56 214.9
Chy02g02547 . 9 158 Response Regulator Gene Family AT1G59940 62.3 8.4e-47 184.5
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G59940 58.7 3.1e-41 166.0
Chy10g00941 . 18 185 Response Regulator Gene Family AT1G10470 67.9 4.9e-55 211.5
Chy02g02547 . 29 167 Response Regulator Gene Family AT1G10470 66.2 4.6e-45 178.3
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G10470 56.7 2.9e-39 159.1
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy02g02547 . 23 163 Response Regulator Gene Family AT5G62920 73.8 9.5e-51 196.8
Chy10g00941 . 25 175 Response Regulator Gene Family AT5G62920 68.2 3.0e-49 191.8
Chy10g01363 . 2 171 Response Regulator Gene Family AT5G62920 52.0 8.3e-39 157.1
Chy08g00289 . 17 164 Response Regulator Gene Family AT5G62920 54.7 7.8e-37 150.6
Chy02g02547 . 29 162 Response Regulator Gene Family AT1G19050 74.6 2.6e-49 192.2
Chy10g00941 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Chy10g01363 . 9 153 Response Regulator Gene Family AT1G19050 55.2 1.0e-37 153.7
Chy08g00289 . 8 270 Response Regulator Gene Family AT2G41310 51.0 1.4e-56 216.5
Chy10g01363 . 3 149 Response Regulator Gene Family AT2G41310 66.0 3.1e-48 188.7
Chy03g00788 . 20 160 Response Regulator Gene Family AT2G41310 62.7 1.4e-43 173.3
Chy10g00941 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Chy02g02547 . 28 159 Response Regulator Gene Family AT2G41310 61.9 8.2e-41 164.1
Chy08g00289 . 8 270 Response Regulator Gene Family AT3G57040 51.5 8.2e-60 227.3
Chy10g01363 . 8 149 Response Regulator Gene Family AT3G57040 70.4 4.5e-50 194.9
Chy03g00788 . 20 194 Response Regulator Gene Family AT3G57040 53.6 3.4e-45 178.7
Chy10g00941 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Chy02g02547 . 25 159 Response Regulator Gene Family AT3G57040 61.8 1.0e-41 167.2
Chy02g02547 . 24 182 Response Regulator Gene Family AT1G74890 69.3 4.3e-52 201.4
Chy10g00941 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Chy10g01363 . 2 159 Response Regulator Gene Family AT1G74890 57.6 1.5e-41 166.4
Chy10g00941 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Chy02g02547 . 29 160 Response Regulator Gene Family AT2G40670 57.8 5.3e-37 151.0
Chy10g00941 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Chy02g02547 . 24 160 Response Regulator Gene Family AT3G56380 58.0 1.4e-39 159.5
Chy10g01363 . 2 148 Response Regulator Gene Family AT3G56380 54.7 1.7e-37 152.5
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy12g01526 . 35 584 Response Regulator Gene Family AT5G61380 50.5 4.1e-143 505.4
Chy08g00806 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.1e-55 213.4
Chy09g01472 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Chy08g00806 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.8e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005633 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 15 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18037 PF00072 Response_reg 3.20E-25 CL0304 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g01262 Chy_Chr05 FPKM 6.65658 7.226488 12.677816 13.169449 18.132441 14.389474 18.772524 20.267265 18.99733 19.331871