Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01262 ATGACTGTGGAGGTTCGAAAGACTAATTTGGTTGGTGAAAATGATGATATGGAGCAGTTTCCTATTGGTATGCGTGTTCTTGCTGTAGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACCAATCAGGCAGTTCAGGCACTTACAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCCGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATAATGTTGTCTGCTCATAGCAATACTGAACTCGTAAAGAAGGGAGTTATTCACGGAGCATGCGACTATTTGCTGAAACCTGTTCGAATTGAAGAACTGAAGAATATATGGCAACATGTCCTTCGAAGAAAGAAACCTTCTGTTAAGAACCAAAATAAGAGTATTAATGGAAATAACACTAGTCAAAGTTTTGAAGTTGCAAAAGGTTGTCCACCTGCAGTCAGTACTGATAACGAGAAATCTGGTAAAAGACAGAAAGACCAAGATGATGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGACGATTCCTCCACCCAAAAAAAGCCAAGAGTAAATTGGTATGATGGAGATGAGAATTTGCACAGGAAGTTCGTGGCAGCTGTTAACATTTTGGGCTATGAAAAGGCTGTTCCCAAAAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAATCTGAGCAATGTAACAAGATGGGTGCATTTGGAGGTACACACACCTCCTTCAGGCCCATGGCATCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCGAATGCTACATTCTCACAGTATCCCTCTCGAGAAATAGTTGGCCAATTAAACTCTACTGCTGGATTGAGCTTAAATGATATTGCTTCCTCTGGAATGATACAGTCCCATAAATTGAGTAACTCATTAAGTTTCATTGGGAAACCCCATCCAGCTTTCTTCCACACAAACCAACCTCCGCACACATTCAATGGCATTTCAATGTCACCGGATCACATTCAGTTACACAGAGACAAACGCACTCTGTCATTTAAAGAATCTAATTTGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAACTTCCCTGATGCTAGAAGGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTGTTTCAAGCCATTCGTTGATGTTACGACGACATAAGCAACAGATTCATGGCGATGGAGAATTCGGAGGGCAGTCTTCTCTTAAGATAACTCTAGACAACCGAGAACCGTTAGACAGCGGCACAAGTGTTTCTAATATTTTGGGCCACAGTCAGTCTAACAAAAACTGGCCAGGTTCAATCCAGCTCCCCAAATTTGCATCTAATGTCTCGGTCACTGGAATTTACCCTCCTGATGGAATGCCCGGTACTTATTTGACAATTTCCTCTGCTCAGCCCGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGGGGATTCAAGTTCTCATCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCGACGGATGGAAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATGGCAACCATAGTTCCATTGTGAGAGACTCTTTTGTTTCTGGGAATAGTGTTGCAGATCCCTTGATCCAGAGTGCAAATCAGAACAATGCAATCTGTCTCGGAAACATGAGCAGCTCTTCGACCAACCAATTGAATATTGGTGCTCCAACCTTCATTCACGATGGTGTGGAAATATCTACAATGAACACTTGGATGAACTACGATGGAAAAATCCCCATGGATCAAACAAAGCTACAACATGGATTTGCAAATTCTAGTTTCAATTCCTTGGATGAGTTGGTTAATGCTCTGTCGAAACAGGATCAAGATCAATCTATTCAAATAAATGGCGAATTTGGATTTGACGCACAATCTCTCGGCTCATCGTGTATATGA 2100 41.29 MTVEVRKTNLVGENDDMEQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALTMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSVKNQNKSINGNNTSQSFEVAKGCPPAVSTDNEKSGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNILGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEESEQCNKMGAFGGTHTSFRPMASLNGFSMTGTGRLSNATFSQYPSREIVGQLNSTAGLSLNDIASSGMIQSHKLSNSLSFIGKPHPAFFHTNQPPHTFNGISMSPDHIQLHRDKRTLSFKESNLINDASSFTVSTNFPDARRAVGSSSNYDFGVSSHSLMLRRHKQQIHGDGEFGGQSSLKITLDNREPLDSGTSVSNILGHSQSNKNWPGSIQLPKFASNVSVTGIYPPDGMPGTYLTISSAQPDNDNFPVGFPSTSGDSSSHLDLRGDTQCYEELIGSVVEATDGRSKQQWEAAKQDYYGNHSSIVRDSFVSGNSVADPLIQSANQNNAICLGNMSSSSTNQLNIGAPTFIHDGVEISTMNTWMNYDGKIPMDQTKLQHGFANSSFNSLDELVNALSKQDQDQSIQINGEFGFDAQSLGSSCI* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16978136 16982096 + Chy5G103080.1 Chy05g01262 227489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01262 699 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Chy05g01262 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 IPR045279 GO:0009736
Chy05g01262 699 MobiDBLite consensus disorder prediction 146 215 - -
Chy05g01262 699 PIRSF RR_ARR_type-B 1 699 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy05g01262 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 679 - -
Chy05g01262 699 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Chy05g01262 699 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Chy05g01262 699 SMART REC_2 24 136 IPR001789 GO:0000160
Chy05g01262 699 Gene3D - 24 183 - -
Chy05g01262 699 Gene3D - 206 272 - -
Chy05g01262 699 SUPERFAMILY CheY-like 23 149 IPR011006 -
Chy05g01262 699 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677
Chy05g01262 699 CDD REC_typeB_ARR-like 26 140 - -
Chy05g01262 699 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01262 Chy-Chr5:16978136 Chy07g00343 Chy-Chr7:2803571 1.00E-136 dispersed
Chy11g01951 Chy-Chr11:25550683 Chy05g01262 Chy-Chr5:16978136 9.65E-27 dispersed
Chy06g02240 Chy-Chr6:26476601 Chy05g01262 Chy-Chr5:16978136 3.49E-09 transposed
Chy11g01950 Chy-Chr11:25549051 Chy05g01262 Chy-Chr5:16978136 2.58E-13 transposed
Chy09g01472 Chy-Chr9:16142628 Chy05g01262 Chy-Chr5:16978136 2.09E-23 transposed
Chy12g01526 Chy-Chr12:19020856 Chy05g01262 Chy-Chr5:16978136 2.86E-18 transposed
Chy02g02099 Chy-Chr2:25279827 Chy05g01262 Chy-Chr5:16978136 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18037 PF00072 Response_reg 3.20E-25 CL0304 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01262 K14491 - csv:101203718 1358.97