Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01281 ATGTCGTTGACACTTGACGATTCCACCAATGGCGATGAAGAATCCATCATCACTCCCTTGCTTGCTCAGAAATCGCTTGCAAATTCTTCCTCACAGGTTGCTATTGTTGGAGCTAATGTTTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTGCTTCATGCAAGATTGGAGAAGTCGTGGGGATTTCCAGATATTTCAGTACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATTGGTTTGATCATGGGTCTTGTTGGATTTTTCAATAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGATCACTTCGAATATGATGCTCGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCTGGTTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGTGTGGATGCCCCTGGAATATTATCGCCTCGGACGCTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCGATGATTGTTGGAAAAGCTGGGCCTATGGTACATACTGGGGCATGTGTTGCATCCTTGGTAGGTCGGGGGGGTTTCAAAATATTTGGCTCAACATGGAGATGGCTATACCTTCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTTCTTTTCGTGCTCCTGTTGGTGGTGTGTTATTTGCTTTTGAAGAGATGACATCTTGGTGGAGAAGTGCCATTCTGTGGCGATCGTTTTTCACAACGGCTGTAGTTGCTGTGGTATTACGCTCACTGATTGACATGTGTTTAAATGGATTATGCGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTCGAAGATCTACCTCCTGTGCTTGTTCTTGCTTTTATCGGAGGCGTACTTGGAAGCTTATATAATTTTTTTTTGAACAAACTTCTTCGCATTTATAATCTCATACACGAGAAAGGCATTATTTACAAAATTTTACTGGCTTGCACGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTTGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACCATAGGTAGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGACACGGACTCCGAGTTCCAGTTGTCATCAATGCTCACATTTTTTGTTACCTGTTTTTCCTTGAGCATTCTAAGTTATGGGACAGTTGCTCCTGTTGGCTTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTCGGAATGGTTGTCGGTCCACACACGAACCTAAGCCATGGCTTCTTTGCCATATTAGGCGCTGCTTCATTTCTCGGGGGGACGATGAGAACAACAGTTTCTCTCTGTGTTATTTTGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTTCTTATTTCCAAGACCGTAGCTGATGCTTTCAACAGTAACATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTATATGGCCATGTTGAGCCATACATGAGGCAGCTCAATGTTGTTGATGTACTAACGAGTCCACTTCAATTATTTAACGGCATTGAGAAGGTTCGCAATGTAGTAAACGTTCTCAGTATGACAAGCCATCACGGATTTCCCGTCATTGATGAACCTCCTTTCTCCGAATACCCTATTTTATATGGTCTAGTTCTCAGAACCCACATTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTTCCAACACTAGGATCAGAAAGAGAAGATCCTTGCAAGCTATTCTCAGCTGATGATTTCGCAAAGATGGGTTCGGGTGATGTTGAAAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCCAATACTTCACCTTGTACTGTCTTGGAGACCACGTCACTTGCAAAGGCTCTTGAAATTTTTCGAGAAACTGGTTTAAGACACATGTTGGTGATTCCCAAGGTCCCTGGGGTACCGGTGTCTACAAGCATCACTTTTTCCAAGCAATGTTTCCACCGTAGTATTCAACAAAATGCATTAACTAATAACTTTTGA 2277 41.81 MSLTLDDSTNGDEESIITPLLAQKSLANSSSQVAIVGANVCPIESLDYEIFDNECFMQDWRSRGDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVITSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGRGGFKIFGSTWRWLYLLKNDRDRRDLVTCGAAAGIAASFRAPVGGVLFAFEEMTSWWRSAILWRSFFTTAVVAVVLRSLIDMCLNGLCGLFGKGGLIIFDTYSDFPTYHLEDLPPVLVLAFIGGVLGSLYNFFLNKLLRIYNLIHEKGIIYKILLACTVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFQLSSMLTFFVTCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPHTNLSHGFFAILGAASFLGGTMRTTVSLCVILLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLYGHVEPYMRQLNVVDVLTSPLQLFNGIEKVRNVVNVLSMTSHHGFPVIDEPPFSEYPILYGLVLRTHIIMLLKKKAFLSVPTLGSEREDPCKLFSADDFAKMGSGDVERIEDVQLTDEEMEMFIDLHPFANTSPCTVLETTSLAKALEIFRETGLRHMLVIPKVPGVPVSTSITFSKQCFHRSIQQNALTNNF* 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17083492 17089519 + Chy5G103270.1 Chy05g01281 227508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01281 758 PANTHER CHLORIDE CHANNEL PROTEIN 12 729 - -
Chy05g01281 758 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g01281 758 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g01281 758 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g01281 758 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g01281 758 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g01281 758 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 12 729 - -
Chy05g01281 758 SUPERFAMILY Clc chloride channel 53 566 IPR014743 -
Chy05g01281 758 CDD CBS_pair_voltage-gated_CLC_euk_bac 580 728 - -
Chy05g01281 758 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g01281 758 SUPERFAMILY CBS-domain pair 567 728 IPR046342 -
Chy05g01281 758 Gene3D Clc chloride channel 67 566 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01281 Chy-Chr5:17083492 Chy06g01639 Chy-Chr6:19009807 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01281 K05016 - csv:101216071 1391.33