Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01292 ATGGACGAAAATGAAAACTGTGGGTGTTGGGCAGTCCTTAAACGCACCGTTTCCGATGTTTCCAAATCTTCTCCTTCTTCTAAACATTCTCCTAACTCCATTCCTCGACTTACTTTGCTTGACGATTCAGCTACCGAGACCCGATACTTAAACGCAAGCGACCGAGATTTCTGTGCGCCGGCCGAATCTCGGCTATCCTTCGACAATGCTCCGCTGCCGACGAGGTTGGAGGACAAATATAAACCCCAGTTGCTAAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGGAATTTCCGGCCAGATAGCATTCTCGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGACGCCGGCGAAACCTGGATCAGGAATCACTGTCGCCGTTAAAAGCTTGAAACCGGATGGCCTTCAAGGACACAGAGAATGGGAGGCTGAAGTTAGTTTTCTTGGACAGCTTCATCATCCTAATCTTGTTAAACTTATTGGATATTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAATCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACGGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACAGGGCATTTGACTTCAAAGAGTGATGTATATAGCTTCGGCGTTGTCCTACTCGAGATCTTAACAGGAAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAACAGAACCTAGTGTCATGGGCTAGACCATATTTAGATGATAAAAGGAAGCTTTATCATATAGTGGACCCTCGTTTGGAGCTTAACTACTCCATCCAGGGCGTTCAAAAAATCTCTCGACTTGCTTCTCACTGTATTAGTAGAGATCCAAAATCTCGTCCGACCATGGATGAAGTTGTCAAGGTTCTCGTTCCTCTACAAGAACTTAACGACCTTGCCATCCTAGCATATCATTCACGCTTGTCTCAACAAGGTCGACGAAAGAAGAAATCAGATGGACTGCACCAGTTAACATACACTCAATCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGATAA 1302 43.78 MDENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLDDSATETRYLNASDRDFCAPAESRLSFDNAPLPTRLEDKYKPQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTTPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKISRLASHCISRDPKSRPTMDEVVKVLVPLQELNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17153188 17157307 + Chy5G103380.1 Chy05g01292 227519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01292 433 PANTHER OS01G0588500 PROTEIN 79 401 - -
Chy05g01292 433 SUPERFAMILY Protein kinase-like (PK-like) 80 381 IPR011009 -
Chy05g01292 433 PANTHER OS01G0588500 PROTEIN-RELATED 79 401 - -
Chy05g01292 433 Gene3D Phosphorylase Kinase; domain 1 74 184 - -
Chy05g01292 433 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672|GO:0006468
Chy05g01292 433 Gene3D Transferase(Phosphotransferase) domain 1 185 395 - -
Chy05g01292 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Chy05g01292 433 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01292 433 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524
Chy05g01292 433 CDD STKc_IRAK 105 381 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02032 Chy05g01292 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01292 Chy-Chr5:17153188 Chy09g00267 Chy-Chr9:2226466 7.40E-178 dispersed
Chy03g00493 Chy-Chr3:6826908 Chy05g01292 Chy-Chr5:17153188 2.74E-30 transposed
Chy02g02032 Chy-Chr2:24341009 Chy05g01292 Chy-Chr5:17153188 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71284 PF07714 PK_Tyr_Ser-Thr 6.80E-49 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01292 - - csv:101217498 849.736