Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01314 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCATCCTCTTCTGAAGAGAAGAGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCAAGAGCTTACGATCAAGCGGCCGTGTTAATGAGTGGCCGGAATGCGAAAACCAACTTTCCGATGAGCCAAACGGCGGTGTCGGAGTTTGAAAAACCGGACAATAATATGATCAATAATATCATTTCTCCATCTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGTGCCGTCGCCATCGATGACGTGTCTCCGACTGGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCTGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTTGGAAAAACCAACTCCTCCTCCTCCTCTTCCACCACGGCCGGCGGAGGACTAGAGGACGGCGACGGTGGGCGGGTGAAAAGGAATAAAAAAAGTGGGTGTTTTTCTGGTTTGATGTCGTCGTCGCCGGAAGGTAGTGGCGGTGGGAGCTGCCAGATGAGGAAGTTGGAAATGGATGATGAAGAAGAAAGAATTGCATTACAAATGATTGAGGAATTACTGAGCAGAAATTATGCCGTCGACTCTACAAGGGAGATAGCAAAGATGTCGATTGAAAGGAAGAAGGAGAAAGTAAGACCGCCCTAA 735 49.93 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSTTAGGGLEDGDGGRVKRNKKSGCFSGLMSSSPEGSGGGSCQMRKLEMDDEEERIALQMIEELLSRNYAVDSTREIAKMSIERKKEKVRPP* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17323731 17327526 + Chy5G103600.1 Chy05g01314 227541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01314 244 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Chy05g01314 244 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 MobiDBLite consensus disorder prediction 177 191 - -
Chy05g01314 244 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 226 - -
Chy05g01314 244 MobiDBLite consensus disorder prediction 145 159 - -
Chy05g01314 244 MobiDBLite consensus disorder prediction 145 195 - -
Chy05g01314 244 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 226 - -
Chy05g01314 244 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Chy05g01314 244 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02005 Chy05g01314 CCT
Chy02g02005 Chy05g01314 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01314 Chy-Chr5:17323731 Chy07g00348 Chy-Chr7:2841084 5.98E-34 dispersed
Chy02g02005 Chy-Chr2:23956117 Chy05g01314 Chy-Chr5:17323731 2.05E-79 wgd
Chy04g00364 Chy-Chr4:3212256 Chy05g01314 Chy-Chr5:17323731 9.40E-73 wgd
Chy05g01314 Chy-Chr5:17323731 Chy07g01612 Chy-Chr7:20241031 1.21E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18040 PF00847 AP2 3.60E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01314 - - csv:101207090 394.815