Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01346 ATGGCTACTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTCCTACTTATGTTTCAGTGGGTCGACTCGGAGCCGACTCAGGATAGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATCTTTCTAATTCCGTCTGTAATTGGGTCGGCGTTGAGTGTGATTCAAATAAGTCCTTTGTTTACTCTCTCCGTTTGCCTGGTGTTGGCCTCGTTGGATCGATTCCGGCTAATACAATTGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCATCGGATTTTTCCAATTTGGTAATGCTAAGGAATTTGTATCTTCAGGATAATGCTTTCTCCGGAGAGTTTCCGTCGAGCTTGACTCGTTTGACTCGGCTGACTCGGCTGGATTTGTCGTCGAATGAATTTTCCGGTCCGATTCCGGCTTCTGTTGACAATCTAACTCACTTGAGCGGGATTTTCTTACAGAATAATGGATTCTCCGGTTCACTCCCGAATATCTCCGCCCTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGCTCGATTCCGAATTCCTTAGCGAAATTCCCCGCCTCTTCCTTCGCCGGAAACTTAGATCTCTGCGGTGGACCATTCCCACCTTGCAACCCATTAACTCCTTCTCCATCTCCATCACAAATCCTCCCACCATCCAACAAAAAATCTAAAAAACTCTCCACGGCTGCAATTATCGGAATCGTAATCGGCGCCGTTTTCGCAGCTTTTCTCCTCCTCCTCATCCTAATCCTCTGCATTCGTCGCCGGTCCAACAAAACACAGACGAAATCACCAAAGCCACCAACGGCGGTGGGAACGGCAGCGAGATCTATTCCAGTAGGAGAAGCTGGAACATCGTCGTCGAAAGACGACATTACCGGAGGGTCAGTGGAGGCGACGGAAAGGAACAAGCTGGTGTTTTTCGAAGGTGGGATTTACAACTTTGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTCGGAACGTCGTATAAGGCGGTGCTAGAAGAAGGGACGACGGTGGTGGTGAAACGGCTGAAGGATGTGGTGGTGACGAAAAAGGAATTTGAGAATCAAATGGAGATTTTGGGGAAAATTAAACATGAAAATGTGGTTCCTCTAAGAGCTTTTTACTTCTCTAAAGATGAGAAATTGCTTGTTTATGATTATATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGACCACGACGCCTGCATTTCCGATTTCGGTCTAAACCCACTTTTCGGCACCGCCACACCGCCGAATCGCGTCGCCGGCTACCGTGCACCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGAGTTCTCCTCCTGGAACTCCTAACAGGAAAAGCCCCCAACCAACAATCCCTCGGTGAGGACGGAATCGACCTTCCACGGTGGGTTCAATCTGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATCGAAGAAGAGATGGTTCAGTTGCTGCAGATTGCAATGTCCTGTGTTTCGACGGTTCCCGATCAACGACCGGCGATGCCGGAAGTTGTACGGATGATCGAAGATATGAGTAGTCATAGAAGTGAGACGGATGATGGGTTGCGTCAGTCTTCCGATGAGCCTTCGAAAGGATCAGACGTGAATACGCCACCGGCGGAGTCTAGAACTCCACCGGGAGTGACGCCGTAG 1815 49.37 MATAISLCSVFLLLLLMFQWVDSEPTQDRQALLDFFSKTPHANRVQWNLSNSVCNWVGVECDSNKSFVYSLRLPGVGLVGSIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFSGEFPSSLTRLTRLTRLDLSSNEFSGPIPASVDNLTHLSGIFLQNNGFSGSLPNISALNLTNFNVSNNKLNGSIPNSLAKFPASSFAGNLDLCGGPFPPCNPLTPSPSPSQILPPSNKKSKKLSTAAIIGIVIGAVFAAFLLLLILILCIRRRSNKTQTKSPKPPTAVGTAARSIPVGEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFENQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMSSHRSETDDGLRQSSDEPSKGSDVNTPPAESRTPPGVTP* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17569042 17573098 - Chy5G103920.1 Chy05g01346 227573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01346 604 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Chy05g01346 604 PANTHER OS05G0480400 PROTEIN 8 432 - -
Chy05g01346 604 PANTHER OS05G0480400 PROTEIN 432 583 - -
Chy05g01346 604 MobiDBLite consensus disorder prediction 283 319 - -
Chy05g01346 604 ProSiteProfiles Protein kinase domain profile. 346 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01346 604 MobiDBLite consensus disorder prediction 304 318 - -
Chy05g01346 604 Pfam Protein kinase domain 434 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01346 604 Pfam Leucine rich repeat 79 126 IPR001611 GO:0005515
Chy05g01346 604 MobiDBLite consensus disorder prediction 582 596 - -
Chy05g01346 604 Pfam Protein tyrosine and serine/threonine kinase 350 433 IPR001245 GO:0004672|GO:0006468
Chy05g01346 604 MobiDBLite consensus disorder prediction 564 581 - -
Chy05g01346 604 Gene3D Phosphorylase Kinase; domain 1 314 420 - -
Chy05g01346 604 SUPERFAMILY L domain-like 28 208 - -
Chy05g01346 604 PANTHER OS05G0588300 PROTEIN 8 432 - -
Chy05g01346 604 Gene3D Transferase(Phosphotransferase) domain 1 426 578 - -
Chy05g01346 604 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Chy05g01346 604 SUPERFAMILY Protein kinase-like (PK-like) 350 565 IPR011009 -
Chy05g01346 604 MobiDBLite consensus disorder prediction 564 604 - -
Chy05g01346 604 Gene3D Ribonuclease Inhibitor 187 227 IPR032675 -
Chy05g01346 604 PANTHER OS05G0588300 PROTEIN 432 583 - -
Chy05g01346 604 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01942 Chy05g01346 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01942 Chy-Chr2:22846973 Chy05g01346 Chy-Chr5:17569042 0 dispersed
Chy05g01346 Chy-Chr5:17569042 Chy11g01173 Chy-Chr11:17853820 0 dispersed
Chy05g01346 Chy-Chr5:17569042 Chy06g01272 Chy-Chr6:11694990 1.05E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71286 PF00069 Pkinase 1.80E-12 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01346 - - csv:101205802 1064.29