Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01360 ATGAAGAGCGATACCCATTTCAACATTCATCTTTTCTTACATTTTTTCTTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGCACTTGAAGAGTTTCGTCAAGCTTCTAGCCATGGAGGACGTGGTCTGACTGATGCTGAAGCTCATTACATCCGTCAACGGCAACTCCTTTACTACAGAGATGAATTTGGTGACCGTGGTGAAGAAGTCGTCGTCGATCGTAAACTTGTTTTTGAAAACGACAGAATTAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTTAAATCTTACTAAGAATTGGGTTGGATCTGATGTTTGTCACTACAAAGGGGTTTTCTGCGCTCCGGCGCCGGATAATTCGTTGATCCGTACAGTCGCCGGAATTGACCTTAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTTCATATAAACTCCAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACTTGAAGTTGTTGTTCGAGTTGGATCTGAGTAATAATCGCTTCGCCGGGAAGTTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTCGAAGGGACGGTTCCTAAGGAGCTTTTTGACAAGGATTTGGACGCCATTTTCATCAACCACAATAGATTCCGGTTTGACTTGCCGGAAAATTTCGGTAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTTATGAATAATGGCTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAAAATTTGACGGTGTTTGATGTGAGTAACAATGAGTTTTTTGGGAAGTTGCCGGAGACGATCGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTTGCGCATAATTTCTTGTCTGGGAAGATTCCGGACAGTATTTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAAGCACCGTCGTGCTTGGCGTTGCCGGACTTTGATGATCGGAGGAACTGTATACCAGAACGACCGGTTCAACGCTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTTTGTTGCTCCGTCGCCACCTGTGGTGGTGCCATCGCCGCCACCTGTGGTGGTCCCTTCTCCGCCACCTGTTGTTGTACCAACACCATCGCCACCTGTTTACCCTCCACCGCCACCAAAATCCGAGTCACATCCCATTTACCGACCCCTCCCTCCGCCGCCGCCTCCACCACCATCCCCATCTCCCCCTCCCCCGCCTGTTTACTCCCCCCCTCCACCTCCACCATCCCCACCTCCACCGTCCCCACCTCCACCGTCCCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCACCATCTCCTCCACCGCCTTCTCCACCACCACCATCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCCACCTCCACCTTCACCGCCCCCGCCATCTCCACCACCTCCACCCTCTCCTCCCCCGCCATCTCCTCCCCCACCATCGCCGCCGCCACCGGCACCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCTCCCAACTCTCCACCACCCCCACCAATGTACTCACCTCCACCACCGCCGCACTCGCCGCCTCCTCCTCCACATTCACCTCCACCACCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCTGTCTATTCTCCACCTCCCCCTCCACCGGTCTATTCACCGCCTCCCCCACCGCCGTGTATAGAACCACCCCCACCTCCTCCTCCGCCGTGTATAGAACATCATGAACCCCCACCCCCACCATCACTCTCCCCACCTCCGCCCATCCAATACCTTCCTCCGCCGTCTCCTTCACTACCTCCACCCCCAGTTTACTATTCACCTCCTCCGCCAGTCTATTACTCTCCACCACCACCACCATCAGCATCGCCGCCTCCGCCACCTGTATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCTTCCCCTCCACCTCCACCCTTCTATTGA 2280 52.63 MKSDTHFNIHLFLHFFFFFGTFLLCLSSSSSALEEFRQASSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDRKLVFENDRIRNAYIALQAWKQAILSDPLNLTKNWVGSDVCHYKGVFCAPAPDNSLIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSNNEFFGKLPETIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSERQCKSFLSKPVDCSSFGCPSFVAPSPPVVVPSPPPVVVPSPPPVVVPTPSPPVYPPPPPKSESHPIYRPLPPPPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPSPPPPSPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPPPVYSPPPPPPCIEPPPPPPPPCIEHHEPPPPPSLSPPPPIQYLPPPSPSLPPPPVYYSPPPPVYYSPPPPPSASPPPPPVSPPPSPVYEGPLPPIYGVSYASPPPPPFY* 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17717964 17720243 - Chy5G104060.1 Chy05g01360 227587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01360 759 MobiDBLite consensus disorder prediction 602 625 - -
Chy05g01360 759 PRINTS Proline rich extensin signature 469 485 - -
Chy05g01360 759 PRINTS Proline rich extensin signature 430 442 - -
Chy05g01360 759 PRINTS Proline rich extensin signature 443 464 - -
Chy05g01360 759 PRINTS Proline rich extensin signature 409 425 - -
Chy05g01360 759 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515
Chy05g01360 759 MobiDBLite consensus disorder prediction 668 696 - -
Chy05g01360 759 MobiDBLite consensus disorder prediction 443 583 - -
Chy05g01360 759 SUPERFAMILY L domain-like 91 371 - -
Chy05g01360 759 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 13 450 - -
Chy05g01360 759 Gene3D Ribonuclease Inhibitor 253 394 IPR032675 -
Chy05g01360 759 Pfam Leucine rich repeat 163 218 IPR001611 GO:0005515
Chy05g01360 759 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 450 - -
Chy05g01360 759 Pfam Leucine rich repeat N-terminal domain 93 125 IPR013210 -
Chy05g01360 759 Gene3D Ribonuclease Inhibitor 91 252 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01907 Chy-Chr2:22139730 Chy05g01360 Chy-Chr5:17717964 0 dispersed
Chy05g01360 Chy-Chr5:17717964 Chy06g00552 Chy-Chr6:3765008 3.82E-153 dispersed
Chy05g01360 Chy-Chr5:17717964 Chy02g01174 Chy-Chr2:8415487 4.98E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01360 - - csv:101210261 791.956