Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01376 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAACGTTGAGTAATTCTTCGTCATCGGATATTCCCTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCCAATTCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCAAAGCCGCAGACGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTACGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAGAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGTTGATGTTGGGTAAGCATAATAAGGGATGCCACTGCAAGAAATCAGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAACTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAAAGGCAAGCTCTTTTCCATGGAGACCATGGTAGCAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATTACCGGAGCTATTGGCTCCTCTGGCTATGCCTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAAGACATATCCGCTCATCGACCAGGGCCATTTCAACAGGCAAATCATGTTAGAGCCACTGCTCCTCCGCTACCATCCTTCCCTATTGCTGGTGTTGGAAGCCCGTCAGTGTTGGGGCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCAGATGGCCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATGGGCAGAAAAAAGATGCATCTGATGAGAAATCTGCAGCTGATGATCGTTCAAGTGCGAACCAGGCTGATAAAATCACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGGGCGCCTATGTCTCCTGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACGATGCTAATGGCTGCTGCTTCTCCCAATAGACTAATGGGTCCTGGTTGCAGCACCTCTTCACAACTGCCTCATGGACAAGACACGTCAGAGGTCTATGCCGAGCAGGAGAGGATCGTCCTTACAAAATTTAGGGATTGTCTTAATAGACTCATCACTTTAGGAGAAATAAAAGAGACAAAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACAACAATTTAACAATGGCACTACAAATTCTAAAACCGAAACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTCACGAAACCTTCGATTACACCGTCAGTGAAGACATCTCAGACGGTAACTCCAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1767 45.44 MGEEDSVGASQKKAQSDGATLSNSSSSDIPSKKLARQLDFTGYGGASNSQSHSNSHSQSQAPLVAQNLPQAQPKPQTQMVAASIAPLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGSNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISAHRPGPFQQANHVRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSTQDGQKKDASDEKSAADDRSSANQADKITPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGQDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETKCSSLARSEVGNQEQQFNNGTTNSKTETQSNLGQLNNKVTKPSITPSVKTSQTVTPAVMTLSNDQRQKVLPLS* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17846256 17850291 - Chy5G104220.1 Chy05g01376 227603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01376 588 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Chy05g01376 588 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 79 - -
Chy05g01376 588 SMART CXC_2 117 157 IPR033467 -
Chy05g01376 588 SMART CXC_2 202 243 IPR033467 -
Chy05g01376 588 MobiDBLite consensus disorder prediction 91 119 - -
Chy05g01376 588 PANTHER TESMIN/TSO1-RELATED 25 79 IPR028307 -
Chy05g01376 588 MobiDBLite consensus disorder prediction 9 32 - -
Chy05g01376 588 MobiDBLite consensus disorder prediction 528 588 - -
Chy05g01376 588 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 60 572 - -
Chy05g01376 588 MobiDBLite consensus disorder prediction 401 416 - -
Chy05g01376 588 MobiDBLite consensus disorder prediction 373 447 - -
Chy05g01376 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Chy05g01376 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Chy05g01376 588 MobiDBLite consensus disorder prediction 42 66 - -
Chy05g01376 588 MobiDBLite consensus disorder prediction 373 400 - -
Chy05g01376 588 MobiDBLite consensus disorder prediction 1 66 - -
Chy05g01376 588 PANTHER TESMIN/TSO1-RELATED 60 572 IPR028307 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01850 Chy05g01376 CCT
Chy02g01850 Chy05g01376 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00396 Chy-Chr5:4248715 Chy05g01376 Chy-Chr5:17846256 7.99E-34 dispersed
Chy05g01376 Chy-Chr5:17846256 Chy06g00555 Chy-Chr6:3787383 9.23E-32 dispersed
Chy02g01850 Chy-Chr2:20804786 Chy05g01376 Chy-Chr5:17846256 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18046 PF03638 TCR 3.10E-12 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01376 - - csv:101211978 1147.88