Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01377 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACTCTCGGCCAGATATCATCCACAAGTACGGGATCCTCGAGCGCGTCGGATCCGGCGCTTATTCCGATGTCTACCGTGCACGGCGGCTCTCCGATGGAGTCATCGTTGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCTCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTTTGCACGAGTACTTTTGGCGGGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCAAAGAAGAGAGGATCGGATGGTGTAGAATCTGGACGTGGGCTTGCGGTTGGGGAGTTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAACATGATCGTTCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCTGATGATGGCATGCTCAAACTTGCCGATTTTGGACAGGCAAGGATACTCATGTATCCTGATTATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATCAACTCTTCAGATCAAGTACCTTCTTCTCAGCCATCTGCAGTTCTTCCTGGAACAGAAAGCTCTGTTCGAGAGGGTAATAGAACTGAAGAGCAAGAAACAATTAGCAAAGAGGAATATTTTAGAGTTTTAGATGAGTTGAAAGCAAAAAATTCAGGAAATGAATTTGACAAAGAAACATGTACTTATGATGGAGATACTTCTTGCTTAGCAACATGTACCACGAGTGATCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACACGGTCCTCTCACTTCATGCGTCGGTACTCGCTGGTTCAGAGCCCCTGAATTACTCTATGGCTCTACAAGCTACGGTTTGGAGATCGATTTGTGGTCATTGGGCTGTATTTTTGCAGAACTTTTAACATTGGAACCCCTTTTTCCAGGAACTGCTGATATAGATCAAATGAGCAGAATTTTTGCTACTCTAGGCAACTTGACTGAAGAGTCATGGCCAGGTTGTTCCGAACTTCCTGATTTTCAGATTATATCATTCAACACAATCGAAAAGCCAATTGGTTTAGAAGCATGTCTTCCCAACTGTTCTGATGAAATTTCTATTGTCAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCAACTGCTATGGAATTGCTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCCGAGCTTCACGTTCCTTCGACCAAAAGTGGACAGGACGAAGATTCTCCTGCAGGATGGTACGATTACAACGAGTCAGATTCTGATATGGATGAACTCGGCCCGTTGAATGTTACCACCAATGCCACTGGTTACTCCATACAATTTGATTGA 1446 44.67 MEPSSAKSWSIHSRPDIIHKYGILERVGSGAYSDVYRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLAVGELKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGMLKLADFGQARILMYPDYVESNEISQPCEINSSDQVPSSQPSAVLPGTESSVREGNRTEEQETISKEEYFRVLDELKAKNSGNEFDKETCTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGHGPLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQMSRIFATLGNLTEESWPGCSELPDFQIISFNTIEKPIGLEACLPNCSDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPSTKSGQDEDSPAGWYDYNESDSDMDELGPLNVTTNATGYSIQFD* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17852764 17854649 - Chy5G104230.1 Chy05g01377 227604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01377 481 Pfam Protein kinase domain 292 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01377 481 Pfam Protein kinase domain 23 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01377 481 PANTHER CELL DIVISION PROTEIN KINASE 18 446 - -
Chy05g01377 481 SUPERFAMILY Protein kinase-like (PK-like) 8 439 IPR011009 -
Chy05g01377 481 ProSiteProfiles Protein kinase domain profile. 21 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01377 481 SMART serkin_6 21 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01377 481 MobiDBLite consensus disorder prediction 190 212 - -
Chy05g01377 481 MobiDBLite consensus disorder prediction 190 223 - -
Chy05g01377 481 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Chy05g01377 481 PANTHER CYCLIN-DEPENDENT KINASE 10 18 446 - -
Chy05g01377 481 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Chy05g01377 481 Gene3D Transferase(Phosphotransferase) domain 1 114 203 - -
Chy05g01377 481 Gene3D Transferase(Phosphotransferase) domain 1 264 433 - -
Chy05g01377 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01377 Chy-Chr5:17852764 Chy02g02329 Chy-Chr2:27266747 5.13E-21 dispersed
Chy05g01377 Chy-Chr5:17852764 Chy03g01669 Chy-Chr3:18451766 8.80E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71288 PF00069 Pkinase 2.30E-32 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01377 - - csv:101209606 947.192