Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01389 ATGGCCGACGCCACCGTGCCGGACATCGACTCCGGTGGTGCCAATTCCTCCTCGTCCTCGTCTTCGTCCTCGACGTCAGGTTCAATATCGTCTCCATCAAAACAAGCCATTGGTCGAAGACCAAAGCGCGGACGAGAAAGCAGCAACAATAGTCCTCACCCAAGTTACCGCGGCGTCCGAATGAGGGCGTGGGGTAAATGGGTGTCCGAAATTCGAGAGCCGAAGAAAAAGAGTCGGATCTGGCTCGGCACCTTCGCTACACCTGACATGGCGGCACGTGCTCACGACGTAGCTGCTCTTACTATCAAAGGCAATTCCGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGTCCCGCCTCCTCGTCTCCTCGCGACGTTCAATCCGCTGCTGCTCTTGCTGCTTCAATGCAACTTCCTGATGTCATGATCTCACCTCCACCACCTCCGCCATCACCACCCTCATCGCCTCCGTGTTCGTCGTCGTCCGAGTTGGACGAATCGACACCAGAGGAATTGAGTGAAATTGTGGTATTGCCGAGTTTGGGGACAGGGTACGAGGAATCAGCTGAGTCGGTGACCGAGTTCGTGTTTGATGAGTGGCAATATAGCTATGGGCCATGGGATCAAGAGAAGGATAGCTCAAAAGAAGAAGAAGAAGGTTATGAATACTTTATAGATCAAACGGCAATGGCGGAAAGAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTATCTTTCTCGTGGTAA 759 52.83 MADATVPDIDSGGANSSSSSSSSSTSGSISSPSKQAIGRRPKRGRESSNNSPHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPDVMISPPPPPPSPPSSPPCSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYGPWDQEKDSSKEEEEGYEYFIDQTAMAERECVIPTALFQPLSFSW* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17949100 17949858 + Chy5G104350.1 Chy05g01389 227616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01389 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 MobiDBLite consensus disorder prediction 144 160 - -
Chy05g01389 252 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 235 - -
Chy05g01389 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 MobiDBLite consensus disorder prediction 10 35 - -
Chy05g01389 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 235 - -
Chy05g01389 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 MobiDBLite consensus disorder prediction 1 63 - -
Chy05g01389 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Chy05g01389 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Chy05g01389 252 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Chy05g01389 252 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00152 Chy-Chr4:1356186 Chy05g01389 Chy-Chr5:17949100 6.16E-44 dispersed
Chy05g01389 Chy-Chr5:17949100 Chy11g01758 Chy-Chr11:23975040 9.93E-37 dispersed
Chy09g00046 Chy-Chr9:411782 Chy05g01389 Chy-Chr5:17949100 6.70E-31 dispersed
Chy09g00049 Chy-Chr9:446130 Chy05g01389 Chy-Chr5:17949100 3.87E-35 dispersed
Chy09g01184 Chy-Chr9:14035460 Chy05g01389 Chy-Chr5:17949100 4.43E-30 dispersed
Chy06g00045 Chy-Chr6:339738 Chy05g01389 Chy-Chr5:17949100 9.59E-40 transposed
Chy06g02066 Chy-Chr6:24840708 Chy05g01389 Chy-Chr5:17949100 6.78E-47 transposed
Chy09g00106 Chy-Chr9:907202 Chy05g01389 Chy-Chr5:17949100 7.74E-29 transposed
Chy01g02093 Chy-Chr1:25646299 Chy05g01389 Chy-Chr5:17949100 1.17E-43 wgd
Chy02g01885 Chy-Chr2:21702613 Chy05g01389 Chy-Chr5:17949100 1.55E-67 wgd
Chy04g00939 Chy-Chr4:13509679 Chy05g01389 Chy-Chr5:17949100 9.78E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18047 PF00847 AP2 7.40E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01389 K09286 - csv:101212945 408.683