Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01408 ATGAAGGCCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCATGACGGCAATCTACTCCTGAATCAGAAAGGAATGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGTTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTTCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTGGTATACTTACATCATGAGCGACATGTCATACACAGAGACATCAAGCCATCCAATCTACTTGTGAATCATAAAGGTGAGGTCAAGATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTTCCTTATTTACAATCTGAGGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATTGTAGCAAAGCCACCTCCTTCAGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCTTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTACATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGACGTCGGGATTCTCGTCGCCAGCTTGGATCCACCGACATGGAAGGCAAAGGAAAGATTGATCTTGAAGATTTTGAAGCCATGGATCAGTTGA 1104 41.58 MKAKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGMRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCSHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLHLLNHPFIKKFEDKDIDVGILVASLDPPTWKAKERLILKILKPWIS* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18086590 18092967 - Chy5G104540.1 Chy05g01408 227635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01408 367 SUPERFAMILY Protein kinase-like (PK-like) 67 342 IPR011009 -
Chy05g01408 367 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Chy05g01408 367 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01408 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 350 - -
Chy05g01408 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Chy05g01408 367 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01408 367 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01408 367 CDD PKc_MAPKK_plant_like 67 333 - -
Chy05g01408 367 PIRSF ILK 2 326 - -
Chy05g01408 367 Gene3D Transferase(Phosphotransferase) domain 1 150 349 - -
Chy05g01408 367 Gene3D Phosphorylase Kinase; domain 1 37 148 - -
Chy05g01408 367 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01249 Chy-Chr2:9102360 Chy05g01408 Chy-Chr5:18086590 5.87E-143 dispersed
Chy04g01430 Chy-Chr4:20944512 Chy05g01408 Chy-Chr5:18086590 2.26E-79 dispersed
Chy05g01408 Chy-Chr5:18086590 Chy12g01379 Chy-Chr12:17994198 6.50E-62 dispersed
Chy05g01408 Chy-Chr5:18086590 Chy05g01452 Chy-Chr5:18365650 6.07E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71290 PF00069 Pkinase 4.60E-66 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01408 K04368 - csv:101218848 680.248