Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01409 ATGTCGTGGCAAGTTTACGTCGATGACCATTTGCTGTGCGAAATTGAGGGCAATCACCTCACTTCTGCGGCCATTATCGGTCAAGACGGCAGCGTTTGGGCTCAAAGCCAAGCTTTCCCTCAGCTCAAGCCTGAAGAAGTTTCTGGCATCGTGGGGGACTTCGATAATCCTGGGACGCTTGCTCCGACTGGTTTGTACATCGGTGGTACAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTTTAGTCATTGGTATCTATGACGAACCAATGACTCCTGGTCAATGCAATATGATTGTTGAAAGGCTTGGGGATTATCTTATCGATCAGGGTCTCTAA 396 48.74 MSWQVYVDDHLLCEIEGNHLTSAAIIGQDGSVWAQSQAFPQLKPEEVSGIVGDFDNPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18094689 18096115 - Chy5G104550.1 Chy05g01409 227636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01409 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Chy05g01409 131 PANTHER PROFILIN-2 1 131 - -
Chy05g01409 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Chy05g01409 131 CDD PROF 2 130 IPR005455 GO:0003779
Chy05g01409 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Chy05g01409 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Chy05g01409 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Chy05g01409 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Chy05g01409 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Chy05g01409 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01409 Chy-Chr5:18094689 Chy05g01410 Chy-Chr5:18102671 2.33E-74 tandem
Chy04g00956 Chy-Chr4:13852717 Chy05g01409 Chy-Chr5:18094689 5.13E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01409 K05759 - csv:101219562 260.381