Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01410 ATGTCGTGGCAAACGTACGTTGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTTGCCGCCGCTGCCATTGTCGGCCACGACGGCAGCGTTTGGGCTCAGAGCGCTTCTTTTCCACAGTTCAAGTCTGATGAGATCAATGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGTGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTCGGAATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 49.5 MSWQTYVDDHLMCDIDGQGQHLAAAAIVGHDGSVWAQSASFPQFKSDEINGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18102671 18104090 - Chy5G104560.1 Chy05g01410 227637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01410 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Chy05g01410 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Chy05g01410 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Chy05g01410 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Chy05g01410 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Chy05g01410 133 SMART prof_2 1 133 IPR005455 GO:0003779
Chy05g01410 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Chy05g01410 133 PANTHER PROFILIN 1 133 - -
Chy05g01410 133 CDD PROF 2 132 IPR005455 GO:0003779
Chy05g01410 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00956 Chy-Chr4:13852717 Chy05g01410 Chy-Chr5:18102671 6.89E-76 dispersed
Chy05g01409 Chy-Chr5:18094689 Chy05g01410 Chy-Chr5:18102671 2.33E-74 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01410 K05759 - csv:101219322 269.24