Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01416 ATGAAGATCGTTGAATTGGAAGAGGCTGGAAATGATCGGCAAAATGAAAAAATCGGTAGTGGTCAGATTGTGAAAGTCGATGCCAAAAGAGCTTTGGTTGGTGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAACAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTGCCCTTCCCCAAAGACGTACCCAGATTGAAGAAGCTTGGTGTCGGTGGTGTTATCACTCTCAATGAACCTTATGAAACTCTAGTTCCATCTTCCTTGTATTATCGCCATGGAATCGATCACTTAAAGATCCCAACGAGAGATTATTGTTTTGCTCCTAAGTTTTCTGATATTAGCCGAGCTGTTGACTTTATTCACAGAAATGCATCATCTGGTAAAACGACATACGTCCATTGTAAAGCAGGACGAGGAAGGAGCACAACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCTGCACTGGACTACGTGCGTTCTAGAAGACCACGCGTGTTGCTTGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTAAACCCGTTACATGTTTTAGCTCACTCTCAGGAGGAGACGCAGTCCTCATTACGAAAGATGATTTAGAAGGATATCACGGTACATGCATCGACAGTGCGGGTAGAGACCTTGCAGTAGTCCCTTGGATGGGTAAGTCAAAGCCGATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGATAGTTCATGGAAGTACTGGATCTCTTATTAAGCGTCTACCCGTACCGGAGGCTCGTGCATGCTGA 858 45.45 MKIVELEEAGNDRQNEKIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALDYVRSRRPRVLLAPSQWEAVQEYSNRKPVTCFSSLSGGDAVLITKDDLEGYHGTCIDSAGRDLAVVPWMGKSKPMIARLSCLFSSLIVHGSTGSLIKRLPVPEARAC* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18131957 18134001 + Chy5G104620.1 Chy05g01416 227643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01416 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Chy05g01416 285 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Chy05g01416 285 CDD PTPMT1 60 204 IPR044596 GO:0004721
Chy05g01416 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Chy05g01416 285 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Chy05g01416 285 PANTHER - 1 285 - -
Chy05g01416 285 PANTHER OS01G0739200 PROTEIN 1 285 - -
Chy05g01416 285 Pfam Dual specificity phosphatase, catalytic domain 100 203 IPR000340 GO:0008138|GO:0016311
Chy05g01416 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Chy05g01416 285 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01416 Chy-Chr5:18131957 Chy06g02072 Chy-Chr6:24907271 5.73E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01416 - - csv:101220751 574.318