Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy05g01423 | ATGATCGTCGGTGAGCAGCCCAAACGCACGAATCCAACGGTTCAGATTCCACAGTGGTCGTTTCTGGAGGATTCCGGGATGGATGTGTACAGTCATTCGCCGGGAAGTGGTGGTAGCAGCGGGTCTGTCAAGTGTGACGGATGTTCTAGCGGTGGTGGGTACTCTCCTTATTATCTACAGGAAGCATTAGCGATGTTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATATTGATGTTTCGGGTAAGGAGATGGATTCTCCGTTGGATGCCTACTCCTCTGATCAGTTTCGAATGTATGAGTTTAAAATTAAAAAGTGTACGAGAGGAAGATCGCATGACTGGACCGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTATTATTCAGGTACGGCGTGTGCGGATTTTCGGAAAGGAAGCTGTGTGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGGAGGAGAGTTTGTTTCTTTGCTCATACACCGGAACAACTTAGGGTTTTGCCTCAACAAAGTCCTCGGAGTACGAGCTCCATCCCTTCGTACGATGGATCGCCTCTACGACAAGCAATCGAGGCCTGTGCAAAACAAATGCCCTATTTATCATCTCCAGGAACATCGCCACCAGTATCTCCTCGAATTGAATCTCCACCTCAATCACCTATTATTAAATCACTAAATCGACCTCACGCACCAAGTTCGATCAAAGAAATGGTTGCATCACTGCGAAATTTACAACTCAATAAGGAACTCTGTAAGTTACCATCTCCTTCTTCTTCTTCTCCCTCATGGAATGTTCAAGTGGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCACTCGATCCGGTTTATCTACCCTTCCAGAAACTTCAACTCCTCCAGGTATCCGATATCTCGATTTCTGGGACCTGGGTATCGGAGAGGAACCGGCAATGGAGCGAGTGGAGTCCGGAAGAGACCTTCGTGCAAAAATGTTCGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGTGATCAGGACAAAAACAGCAGCGGTGCGGGAGGTCTGGATGTCGGTTGGATCTCAGAGCTCCTCCAGTAA | 1191 | 49.2 | MIVGEQPKRTNPTVQIPQWSFLEDSGMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPLDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSIKEMVASLRNLQLNKELCKLPSPSSSSPSWNVQVGSPVFGSPKESTTRSGLSTLPETSTPPGIRYLDFWDLGIGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKNSSGAGGLDVGWISELLQ* | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18195541 | 18196731 | + | Chy5G104690.1 | Chy05g01423 | 227650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy05g01423 | 396 | MobiDBLite | consensus disorder prediction | 306 | 326 | - | - | |
Chy05g01423 | 396 | MobiDBLite | consensus disorder prediction | 237 | 263 | - | - | |
Chy05g01423 | 396 | Gene3D | - | 140 | 203 | - | - | |
Chy05g01423 | 396 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872 | |
Chy05g01423 | 396 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872 | |
Chy05g01423 | 396 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 395 | IPR045234 | - | |
Chy05g01423 | 396 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872 | |
Chy05g01423 | 396 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 395 | - | - | |
Chy05g01423 | 396 | MobiDBLite | consensus disorder prediction | 368 | 388 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01626 | Chy-Chr3:18186541 | Chy05g01423 | Chy-Chr5:18195541 | 8.85E-74 | dispersed | |
Chy05g01423 | Chy-Chr5:18195541 | Chy07g00223 | Chy-Chr7:1831517 | 1.93E-105 | dispersed | |
Chy05g01423 | Chy-Chr5:18195541 | Chy02g01185 | Chy-Chr2:8505957 | 1.03E-150 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18049 | None | None | None | None | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy05g01423 | - | - | csv:101221692 | 764.222 |