Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01423 ATGATCGTCGGTGAGCAGCCCAAACGCACGAATCCAACGGTTCAGATTCCACAGTGGTCGTTTCTGGAGGATTCCGGGATGGATGTGTACAGTCATTCGCCGGGAAGTGGTGGTAGCAGCGGGTCTGTCAAGTGTGACGGATGTTCTAGCGGTGGTGGGTACTCTCCTTATTATCTACAGGAAGCATTAGCGATGTTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATATTGATGTTTCGGGTAAGGAGATGGATTCTCCGTTGGATGCCTACTCCTCTGATCAGTTTCGAATGTATGAGTTTAAAATTAAAAAGTGTACGAGAGGAAGATCGCATGACTGGACCGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAGGTATTATTATTCAGGTACGGCGTGTGCGGATTTTCGGAAAGGAAGCTGTGTGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGGAGGAGAGTTTGTTTCTTTGCTCATACACCGGAACAACTTAGGGTTTTGCCTCAACAAAGTCCTCGGAGTACGAGCTCCATCCCTTCGTACGATGGATCGCCTCTACGACAAGCAATCGAGGCCTGTGCAAAACAAATGCCCTATTTATCATCTCCAGGAACATCGCCACCAGTATCTCCTCGAATTGAATCTCCACCTCAATCACCTATTATTAAATCACTAAATCGACCTCACGCACCAAGTTCGATCAAAGAAATGGTTGCATCACTGCGAAATTTACAACTCAATAAGGAACTCTGTAAGTTACCATCTCCTTCTTCTTCTTCTCCCTCATGGAATGTTCAAGTGGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCACTCGATCCGGTTTATCTACCCTTCCAGAAACTTCAACTCCTCCAGGTATCCGATATCTCGATTTCTGGGACCTGGGTATCGGAGAGGAACCGGCAATGGAGCGAGTGGAGTCCGGAAGAGACCTTCGTGCAAAAATGTTCGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGTGATCAGGACAAAAACAGCAGCGGTGCGGGAGGTCTGGATGTCGGTTGGATCTCAGAGCTCCTCCAGTAA 1191 49.2 MIVGEQPKRTNPTVQIPQWSFLEDSGMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPLDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSIKEMVASLRNLQLNKELCKLPSPSSSSPSWNVQVGSPVFGSPKESTTRSGLSTLPETSTPPGIRYLDFWDLGIGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKNSSGAGGLDVGWISELLQ* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18195541 18196731 + Chy5G104690.1 Chy05g01423 227650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01423 396 MobiDBLite consensus disorder prediction 306 326 - -
Chy05g01423 396 MobiDBLite consensus disorder prediction 237 263 - -
Chy05g01423 396 Gene3D - 140 203 - -
Chy05g01423 396 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Chy05g01423 396 SMART c3hfinal6 174 197 IPR000571 GO:0046872
Chy05g01423 396 PANTHER UNKEMPT FAMILY MEMBER 8 395 IPR045234 -
Chy05g01423 396 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Chy05g01423 396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 395 - -
Chy05g01423 396 MobiDBLite consensus disorder prediction 368 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01626 Chy-Chr3:18186541 Chy05g01423 Chy-Chr5:18195541 8.85E-74 dispersed
Chy05g01423 Chy-Chr5:18195541 Chy07g00223 Chy-Chr7:1831517 1.93E-105 dispersed
Chy05g01423 Chy-Chr5:18195541 Chy02g01185 Chy-Chr2:8505957 1.03E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18049 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01423 - - csv:101221692 764.222