Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g01451 ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGTGGAGGAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGTTTCATATTGGTTCACGTTATGCCCAAAATCACCTCCATCCCAACCCCAATGGGGGATCTTGTGGCTGTCTCAGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATGTGAAACAGAAATATGAACAAGTTTTTGTCCCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTATTTTGGTAGAAACTTTGATTTTGGAGGATGATAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAAAGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAACTAAAAGGTGATTCAGTACCCTCTGCTATTATGAGAACTGCTTCTAGTTCTTTTGATGTTTATGTTAAATATAAGAGAAGAGTTATCACAAGAAAGGCTAGTACTGCTCCATCTACTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTACTACAGGGGTTCCAGTGCTGCCAGTGAAAAATCATTGGGAACTGATCTGTCTTCGTCTTACTTGTCGATTGTTCATCAAAGGGTTGACAGCATCGGAGTTGACTCTACTGAGCAACTGCATACTCTTACTGTGGAGGAAGATATGCAGTCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACGCACTCAGAAGAAGGTTCAGTCACTTGCATCAGAATACCTTGAAGAATCAAGAAAAGTGACTGATGCTGTGGAAAGGGAGCAAGCTTTGAGGAAAGTTGCTGCCAAGGAGAAAGCAAAGCACTTGGAAGCCATTAAAGAGCTCGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGACAGTTAGCGGAGCTTGATGCCTTGAAGGAGTCCGTGGAGAAGCAGAAAATTATCGATACTCTTCTGACTAATGATAGGAGATACAGAAGATATACCACTGCTGAAATAGAGGCTGCAACTAATTTCTTCAATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTATAAATGCAGTCTTGATCATACCCCTGTAGCCATTAAGGTTTATCAACACGACATATTCGAGAAAAAAGACGAGTTTCTAAAAGAGGTTGAAATTCTTAGCCAGATACGACATCCACACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGATTGGAAAAGCTCCCCTTCCTTGGTCTACTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTCAAACCGGGTAATATCTTACTTGACAGAAACTTTGTAAGCAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGCGATATCGTACCAGACAATGTGACGGAGTACCAGAACACCGTTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCGAAGTCGGATACTTATGCACTTGGAGTAACAATTCTGCAGTTATTGACTGGGCGACAGCCACACGGTCTTCTTCTCGCTATTGAAAATTCCATTGCAAGCGCTTCCCTTGCAGATATTCTAGACAAGTCAATTAGTGACTGGCCTCTAGCTAAAGCTGAAGAGCTAGCTCGACTTGCATTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCCGAAGTTCTTCCAATCCTTAAAAGACTTGTTGATTTTGCAGACACTTTTCAAAATGAAGACAAAGGTTTTGGCAACCCCCCCAGCCACTACTTCTGCCCAATCCTCCAGGAAGTCATGGAGGATCCTTATATAGCAGCTGATGGCTTTAGTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAACACGACGTATCGCCGGTGACAAAGCTTAAGCTCCAGCATTCTTTTTTTATTCCAAACTACACTCTACGTTCTGCCATACGAGAGTGGAGGTCAAGAGTGACATTTTCGTCTTCCTAA 2184 43.27 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQVFVPFKKLCRREKFLILVETLILEDDNPATALLRYASESGIKSLVLGSCFRTCIARKLKGDSVPSAIMRTASSSFDVYVKYKRRVITRKASTAPSTETDSRQWMLGDTDYYRGSSAASEKSLGTDLSSSYLSIVHQRVDSIGVDSTEQLHTLTVEEDMQSEVESLQLELETTVSLYKQACEELVRTQKKVQSLASEYLEESRKVTDAVEREQALRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELDALKESVEKQKIIDTLLTNDRRYRRYTTAEIEAATNFFNEVNVIGEGGYGKVYKCSLDHTPVAIKVYQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRIGKAPLPWSTRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYQNTVLAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAIENSIASASLADILDKSISDWPLAKAEELARLALKCLKLRCRDRPDLESEVLPILKRLVDFADTFQNEDKGFGNPPSHYFCPILQEVMEDPYIAADGFSYEYVAIKAWLEKHDVSPVTKLKLQHSFFIPNYTLRSAIREWRSRVTFSSS* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18361498 18364709 + Chy5G104970.1 Chy05g01451 227678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g01451 727 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 152 - -
Chy05g01451 727 CDD RING-Ubox_WDSUB1_like 657 697 - -
Chy05g01451 727 PANTHER OS02G0152300 PROTEIN 2 210 - -
Chy05g01451 727 PANTHER OS02G0152300 PROTEIN 225 721 - -
Chy05g01451 727 Pfam U-box domain 654 719 IPR003613 GO:0004842|GO:0016567
Chy05g01451 727 SMART Ubox_2 656 718 IPR003613 GO:0004842|GO:0016567
Chy05g01451 727 SUPERFAMILY Protein kinase-like (PK-like) 353 626 IPR011009 -
Chy05g01451 727 Coils Coil 296 342 - -
Chy05g01451 727 ProSitePatterns Protein kinases ATP-binding region signature. 376 397 IPR017441 GO:0005524
Chy05g01451 727 Gene3D Transferase(Phosphotransferase) domain 1 443 649 - -
Chy05g01451 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 724 IPR013083 -
Chy05g01451 727 Gene3D HUPs 2 159 IPR014729 -
Chy05g01451 727 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 210 - -
Chy05g01451 727 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 225 721 - -
Chy05g01451 727 Pfam Universal stress protein family 19 153 IPR006016 -
Chy05g01451 727 Coils Coil 257 277 - -
Chy05g01451 727 ProSiteProfiles U-box domain profile. 652 725 IPR003613 GO:0004842|GO:0016567
Chy05g01451 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Chy05g01451 727 SUPERFAMILY RING/U-box 643 721 - -
Chy05g01451 727 Gene3D Phosphorylase Kinase; domain 1 349 442 - -
Chy05g01451 727 CDD STK_N 3 160 - -
Chy05g01451 727 Pfam Protein kinase domain 371 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01451 727 SMART serkin_6 370 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g01451 727 ProSiteProfiles Protein kinase domain profile. 370 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g01451 - - - csv:101213999 1297.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00834 Chy-Chr5:11953629 Chy05g01451 Chy-Chr5:18361498 1.52E-09 dispersed
Chy05g01451 Chy-Chr5:18361498 Chy09g01031 Chy-Chr9:12833155 1.19E-17 dispersed
Chy11g01644 Chy-Chr11:22933805 Chy05g01451 Chy-Chr5:18361498 3.95E-76 dispersed
Chy05g01451 Chy-Chr5:18361498 Chy04g00284 Chy-Chr4:2522498 9.24E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01451 . 2 721 Plant U-box Gene Family AT5G57035 52.4 4.1e-220 761.5
Chy04g00564 . 196 430 Plant U-box Gene Family AT5G05230 59.2 1.9e-71 266.5
Chy10g00311 . 141 375 Plant U-box Gene Family AT5G05230 59.2 3.0e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71292 PF00069 Pkinase 6.60E-42 CL0016 Chy PK